当前解析结果
SmilChr06G001718| 统一新 Gene ID | SmilChr06G001718 |
|---|---|
| 名称 | SmilChr06G001718 |
| 描述 | uncharacterized SmilChr06G001718 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 19796347 - 19799908 / - |
| NCBI Gene ID | LOC130990623 |
|---|---|
| GeneID | 130990623 |
| locus_tag | - |
| NCBI Name | LOC130990623 |
| 原始查询 | LOC130990623 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=weak |
| 产物 | hit=Os06g0484800; species=rice; confidence=weak |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=31.1; qcov=0.189; evalue=1.07e-16; confidence=weak |
| Rice | Os06g0484800- identity=36.8; qcov=0.166; evalue=2.38e-21; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990623 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770826.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057770826.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057770826.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770826.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770826.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:19796458 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B53 |
Chr6:19796458 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B53 |
Chr6:19796472 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | C83 |
Chr6:19796472 |
C |
CG |
1bp_insertion | CDS_variant | 1 | C83 |
Chr6:19796474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr6:19796477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C76,C84 |
Chr6:19796509 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr6:19796532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B62,C4,C71 |
Chr6:19796556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,B9,C44 |
Chr6:19796564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B130,C47 |
Chr6:19796567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr6:19796636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C76,C84 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。