Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003181`

染色体: Chr01 坐标: 50587005-50592990 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003181`
名称	SmilChr01G003181
描述	3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	50587005 - 50592990 / `-`

ID 对照

NCBI Gene ID	`LOC130990628`
GeneID	`130990628`
locus_tag	`-`
NCBI Name	`LOC130990628`
原始查询	`LOC130990628`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like
产物	3-oxoacyl-[acyl-carrier-protein] synthase II%2C chloroplastic-like
Arabidopsis	`AT1G74960` (FAB1) fatty acid biosynthesis 1 [Source:NCBI gene (formerly Entrezgene);Acc:843835] identity=67.5; qcov=0.905; evalue=0; confidence=high
Rice	`Os07g0616200` (B1056G08.109) - identity=70.4; qcov=0.831; evalue=0; confidence=high
GO	GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity); GO:0006633 (fatty acid biosynthetic process); GO:0009570 (chloroplast stroma)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00780 (Biotin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00109 (ketoacyl-synt); PF02801 (Ketoacyl-synt_C)
InterPro	-
eggNOG	-
NR	GeneID:130990628

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057770833.1`
2	Chloroplast stroma	叶绿体基质	0.40000	`XP_057770833.1`
3	Nucleus	细胞核	0.00000	`XP_057770833.1`
4	Chromosome	染色体	0.00000	`XP_057770833.1`
5	Centromere	着丝粒	0.00000	`XP_057770833.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:50587149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:50587709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B90,B92,D11
`Chr1:50589969`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,C33
`Chr1:50590267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B28
`Chr1:50590463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,C33
`Chr1:50590533`	`A`	`AT`	1bp_insertion	frameshift_variant	1	C31
`Chr1:50590533`	`A`	`AT`	1bp_insertion	CDS_variant	1	C31
`Chr1:50591024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr1:50591114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C60,D11
`Chr1:50591433`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770833.1

496 aa

248

496

ketoacyl-synt

Ketoacyl-synt_C

PF00109 ketoacyl-synt 86-331 aa PF02801 Ketoacyl-synt_C 349-450 aa

XP_057770839.1

496 aa

248

496

ketoacyl-synt

Ketoacyl-synt_C

PF00109 ketoacyl-synt 86-331 aa PF02801 Ketoacyl-synt_C 349-450 aa

XP_057770846.1

496 aa

248

496

ketoacyl-synt

Ketoacyl-synt_C

PF00109 ketoacyl-synt 86-331 aa PF02801 Ketoacyl-synt_C 349-450 aa

XP_057770850.1

496 aa

248

496

ketoacyl-synt

Ketoacyl-synt_C

PF00109 ketoacyl-synt 86-331 aa PF02801 Ketoacyl-synt_C 349-450 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770833.1`	Pfam	`PF00109`	ketoacyl-synt	Domain	86	331	1.2e-50	173.2	Beta-ketoacyl synthase, N-terminal domain
`XP_057770833.1`	Pfam	`PF02801`	Ketoacyl-synt_C	Domain	349	450	3.6e-29	101.9	Beta-ketoacyl synthase, C-terminal domain
`XP_057770839.1`	Pfam	`PF00109`	ketoacyl-synt	Domain	86	331	1.2e-50	173.2	Beta-ketoacyl synthase, N-terminal domain
`XP_057770839.1`	Pfam	`PF02801`	Ketoacyl-synt_C	Domain	349	450	3.6e-29	101.9	Beta-ketoacyl synthase, C-terminal domain
`XP_057770846.1`	Pfam	`PF00109`	ketoacyl-synt	Domain	86	331	1.2e-50	173.2	Beta-ketoacyl synthase, N-terminal domain
`XP_057770846.1`	Pfam	`PF02801`	Ketoacyl-synt_C	Domain	349	450	3.6e-29	101.9	Beta-ketoacyl synthase, C-terminal domain
`XP_057770850.1`	Pfam	`PF00109`	ketoacyl-synt	Domain	86	331	1.2e-50	173.2	Beta-ketoacyl synthase, N-terminal domain
`XP_057770850.1`	Pfam	`PF02801`	Ketoacyl-synt_C	Domain	349	450	3.6e-29	101.9	Beta-ketoacyl synthase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057914850.1
CTTGTATCCATATTTCAGTTGAGTTTTTGAGTTGAAACTAAAATGATGGTGGCATCATCTGCAGTCTCCCCTCTTTGCACATGGTTAGTAGCAGCTTGCATGAGTTCATCAAGCGAAAATAAGCATTTCAATGAATTTTCAAATTATTTTCAATACCAAAAGAAGTTGAGAAGAAGGGGGAATTTGGTGGCTCTCACTACCAACAAGAATCGGGGGCGAATACAGTTGAGTCGAGCTCGTGATTCAGACGAGGAGAAATC...

XM_057914863.1
AAAACACAAGCTCAAGTTGAGAGTTTTTGAGTTGAAACTAAAATGATGGTGGCATCATCTGCAGTCTCCCCTCTTTGCACATGGTTAGTAGCAGCTTGCATGAGTTCATCAAGCGAAAATAAGCATTTCAATGAATTTTCAAATTATTTTCAATACCAAAAGAAGTTGAGAAGAAGGGGGAATTTGGTGGCTCTCACTACCAACAAGAATCGGGGGCGAATACAGTTGAGTCGAGCTCGTGATTCAGACGAGGAGAAATC...

CDS

4 records

下载 CDS FASTA

LOC130990628
ATGATGGTGGCATCATCTGCAGTCTCCCCTCTTTGCACATGGTTAGTAGCAGCTTGCATGAGTTCATCAAGCGAAAATAAGCATTTCAATGAATTTTCAAATTATTTTCAATACCAAAAGAAGTTGAGAAGAAGGGGGAATTTGGTGGCTCTCACTACCAACAAGAATCGGGGGCGAATACAGTTGAGTCGAGCTCGTGATTCAGACGAGGAGAAATCCGCAGTGGCTACAGAGACACTTATAAAATCAAAGAAAAGAAG...

Protein

4 records

下载 Protein FASTA

XP_057770833.1
MMVASSAVSPLCTWLVAACMSSSSENKHFNEFSNYFQYQKKLRRRGNLVALTTNKNRGRIQLSRARDSDEEKSAVATETLIKSKKRRVVVTGLGVVSPLGHDVDEFYGNILQGISGVTQIEAFDSTQFPTRIAGEIKSFSADGFISKKIAKRADKYMLYLIAAGKKALADGKMRDDVMQELDKGKCGIVIGSALGGMKVFSDGVEALRVSHKKMNPFSVPFATTNMGSAILAMDLGWMGPNYSISAACATSNICILNAAN...

XP_057770839.1
MMVASSAVSPLCTWLVAACMSSSSENKHFNEFSNYFQYQKKLRRRGNLVALTTNKNRGRIQLSRARDSDEEKSAVATETLIKSKKRRVVVTGLGVVSPLGHDVDEFYGNILQGISGVTQIEAFDSTQFPTRIAGEIKSFSADGFISKKIAKRADKYMLYLIAAGKKALADGKMRDDVMQELDKGKCGIVIGSALGGMKVFSDGVEALRVSHKKMNPFSVPFATTNMGSAILAMDLGWMGPNYSISAACATSNICILNAAN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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