Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G001824

染色体: Chr06 坐标: 21411938-21412468 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G001824
名称SmilChr06G001824
描述uncharacterized SmilChr06G001824
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向21411938 - 21412468 / -

ID 对照

NCBI Gene IDLOC130990638
GeneID130990638
locus_tag-
NCBI NameLOC130990638
原始查询LOC130990638

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low
产物DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]; symbol=AT3G47680; hit=AT3G47680; species=arabidopsis; confidence=low
ArabidopsisAT3G47680 (AT3G47680)
DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922]
identity=32.6; qcov=0.557; evalue=2.59e-11; confidence=low
RiceOs02g0463725
-
identity=29.3; qcov=0.466; evalue=5.49e-09; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130990638

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057770845.1
2 Chromosome 染色体 0.00000 XP_057770845.1
3 Centromere 着丝粒 0.00000 XP_057770845.1
4 Chromatin 染色质 0.00000 XP_057770845.1
5 Telomere 端粒 0.00000 XP_057770845.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr6:21411939 C T EMS_canonical_SNV CDS_variant 2 C53,D11
Chr6:21411940 A AT 1bp_insertion frameshift_variant 9 B112,B131,B132,B24,C1,C14,C17,C30,C74
Chr6:21411972 G A EMS_canonical_SNV CDS_variant 1 C87
Chr6:21411975 G A EMS_canonical_SNV CDS_variant 1 C61
Chr6:21411985 C T EMS_canonical_SNV CDS_variant 3 B112,B132,C1
Chr6:21411987 G A EMS_canonical_SNV CDS_variant 4 A20,B137,B14,C50
Chr6:21412013 GA G 1bp_deletion frameshift_variant 1 C70
Chr6:21412013 GA G 1bp_deletion CDS_variant 1 C70
Chr6:21412015 C T EMS_canonical_SNV CDS_variant 5 B103,B112,B132,B30,C1
Chr6:21412026 C T EMS_canonical_SNV CDS_variant 2 B40,C53
Chr6:21412044 G A EMS_canonical_SNV CDS_variant 2 C53,D11
Chr6:21412046 TC T 1bp_deletion frameshift_variant 31 A10,A11,A16,A20,A24,A4,B110,B114,B118,B128,B13,B133,B137,B14,B16,B2,B30,B51,B57,B59,B66,B73,B77,B89,B96,C36,C50,C52,C72,C83,C84

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057914862.1
ATGTCATCTTGGATCTATGCTAACGAAGATAGCATTCAAGGGAAAAGTCAAAAAGGGGAATCGCTTTGGGCACGTGTGCATAAATTTTATCACATAACTCAAGCAGAAAATCCCAACGAGCTCAACGAGCGAAACATTGAATCAATGAAAGGTCGCTGGAAACGTCTTAATGAAAATGCAAACAAATGGGTTGCTGCTTGCAGGGAGGCAAATGCTCGAAGAAGGAGTGGAATGAGCGACAACGATGTTGAGAAAAAAGC...

CDS

1 records

下载 CDS FASTA
LOC130990638
ATGTCATCTTGGATCTATGCTAACGAAGATAGCATTCAAGGGAAAAGTCAAAAAGGGGAATCGCTTTGGGCACGTGTGCATAAATTTTATCACATAACTCAAGCAGAAAATCCCAACGAGCTCAACGAGCGAAACATTGAATCAATGAAAGGTCGCTGGAAACGTCTTAATGAAAATGCAAACAAATGGGTTGCTGCTTGCAGGGAGGCAAATGCTCGAAGAAGGAGTGGAATGAGCGACAACGATGTTGAGAAAAAAGC...

Protein

1 records

下载 Protein FASTA
XP_057770845.1
MSSWIYANEDSIQGKSQKGESLWARVHKFYHITQAENPNELNERNIESMKGRWKRLNENANKWVAACREANARRRSGMSDNDVEKKAHSIYEVGGRKFQDLVVFNEVMSKHLKWNLYDTTPIFPHASEDVDNHQSGGSSKRSKTSEDGRFSVPSNPETPTSEQSTATRPIGKDKAK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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