Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003180`

染色体: Chr01 坐标: 50583498-50586790 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003180`
名称	SmilChr01G003180
描述	25.3 kDa vesicle transport protein SEC22-1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	50583498 - 50586790 / `+`

ID 对照

NCBI Gene ID	`LOC130990647`
GeneID	`130990647`
locus_tag	`-`
NCBI Name	`LOC130990647`
原始查询	`LOC130990647`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	25.3 kDa vesicle transport protein SEC22-1
产物	25.3 kDa vesicle transport protein SEC22-1
Arabidopsis	`AT1G11890` (SEC22) Synaptobrevin family protein [Source:NCBI gene (formerly Entrezgene);Acc:837737] identity=90.8; qcov=1; evalue=5.22e-153; confidence=high
Rice	`Os03g0791500` (OSJNBb0060J21.31) - identity=85.8; qcov=1; evalue=3.25e-146; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0005484 (SNAP receptor activity); GO:0005789 (endoplasmic reticulum membrane); GO:0005793 (endoplasmic reticulum-Golgi intermediate compartment); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006890 (retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum); GO:0012507 (ER to Golgi transport vesicle membrane); GO:0031201 (SNARE complex); GO:0048280 (vesicle fusion with Golgi apparatus)
KEGG	smil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00957 (Synaptobrevin); PF13774 (Longin)
InterPro	-
eggNOG	-
NR	GeneID:130990647

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057770859.1`
2	Vesicle	囊泡	1.00000	`XP_057770859.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.80000	`XP_057770859.1`
4	Endoplasmic reticulum	内质网	0.60000	`XP_057770859.1`
5	Endoplasmic reticulum-golgi intermediate compartment	Endoplasmic reticulum-golgi intermediate compartment	0.60000	`XP_057770859.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:50584590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C22,C35
`Chr1:50584716`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:50585412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B14,C26
`Chr1:50585986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770859.1

218 aa

109

218

Longin

Synaptobrevin

PF13774 Longin 31-120 aa PF00957 Synaptobrevin 135-213 aa

XP_057770863.1

218 aa

109

218

Longin

Synaptobrevin

PF13774 Longin 31-120 aa PF00957 Synaptobrevin 135-213 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770859.1`	Pfam	`PF13774`	Longin	Domain	31	120	4.4e-29	101.3	Regulated-SNARE-like domain
`XP_057770859.1`	Pfam	`PF00957`	Synaptobrevin	Domain	135	213	8.9e-18	64.7	Synaptobrevin
`XP_057770863.1`	Pfam	`PF13774`	Longin	Domain	31	120	4.4e-29	101.3	Regulated-SNARE-like domain
`XP_057770863.1`	Pfam	`PF00957`	Synaptobrevin	Domain	135	213	8.9e-18	64.7	Synaptobrevin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914876.1
AATGAGAGGAAATGAATTTTAGGAAAAGTTGTCCAAAACAAAACGTAAATGCATTTTCCTGTTGCCGTGAAAAATCGAAAACAGCCAATAAAAGTTCACGCACGCCCTCTCACAATTTCAGTCAAAATTTGGACAACATTTCATTACCCTCATTTTCCCCATTGGCCCTTGATTGTTGTCGCGATATTTCGTTCAGATCGTTCGAATTTTGAGCGCAGGATCTATTTTAGGGGTACAATTCTGTAATCGTTGAACCTAAT...

XM_057914880.1
TGAATTTTAGGAAAAGTTGTCCAAAACAAAACGTAAATGCATTTTCCTGTTGCCGTGAAAAATCGAAAACAGCCAATAAAAGTTCACGCACGCCCTCTCACAATTTCAGTCAAAATTTGGACAACATTTCATTACCCTCATTTTCCCCATTGGCCCTTGATTGTTGTCGCGATATTTCGTTCAGATCGTTCGAATTTTGAGCGCAGGATCTATTTTAGGGGTACAATTCTGTAATCGTTGAACCTAATTGAAGATCGGCG...

CDS

2 records

下载 CDS FASTA

LOC130990647
ATGGTGAAGTTGACTATGATTGCTCGTGTTACTGATGGCCTTCCATTAGCGGAGGGTCTGGATGATGGACGTGATGTATCTGATGCCGACTTTTATAAACAGCAAGTGAAGTCTTTGTTCAAAAATTTGTCAAGGGGCCAGAATGATGCATCAAGGATGTCTATCGAAACAGGGCCTTATATATTTCATTATATTATTGAAGGGCGTGTGTGCTACTTGACAATGTGCGACCGTGCATATCCTAAGAAGCTTTCCTTTCA...

Protein

2 records

下载 Protein FASTA

XP_057770859.1
MVKLTMIARVTDGLPLAEGLDDGRDVSDADFYKQQVKSLFKNLSRGQNDASRMSIETGPYIFHYIIEGRVCYLTMCDRAYPKKLSFQYLEDLKNEFERAYGNQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNISKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSQMSSRLTSESRIYAEKAKDLNRQALIRKWAPVAVVLGVVFLLFWVKNKLW

XP_057770863.1
MVKLTMIARVTDGLPLAEGLDDGRDVSDADFYKQQVKSLFKNLSRGQNDASRMSIETGPYIFHYIIEGRVCYLTMCDRAYPKKLSFQYLEDLKNEFERAYGNQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNISKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSQMSSRLTSESRIYAEKAKDLNRQALIRKWAPVAVVLGVVFLLFWVKNKLW

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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