当前解析结果
SmilChr06G001921| 统一新 Gene ID | SmilChr06G001921 |
|---|---|
| 名称 | SmilChr06G001921 |
| 描述 | ABC transporter B family member 26, chloroplastic-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 23204970 - 23211413 / - |
| NCBI Gene ID | LOC130990657 |
|---|---|
| GeneID | 130990657 |
| locus_tag | - |
| NCBI Name | LOC130990657 |
| 原始查询 | LOC130990657 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 26, chloroplastic-like |
| 产物 | ABC transporter B family member 26%2C chloroplastic-like |
| Arabidopsis | AT1G70610 (ABCB26)transporter associated with antigen processing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:843398] identity=49.8; qcov=0.891; evalue=0; confidence=high |
| Rice | Os01g0911300 (OsABCB24)- identity=56.3; qcov=0.465; evalue=2e-126; confidence=medium |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990657 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057770867.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057770867.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770867.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770867.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770867.1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057770867.1PF00664
ABC_membrane 213-409 aa
PF00005
ABC_tran 472-621 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770867.1 |
Pfam | PF00664 |
ABC_membrane | Family | 213 | 409 | 5.7e-33 | 115.5 | ABC transporter transmembrane region |
XP_057770867.1 |
Pfam | PF00005 |
ABC_tran | Domain | 472 | 621 | 9.9e-33 | 114.4 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。