当前解析结果
SmilChr06G002019| 统一新 Gene ID | SmilChr06G002019 |
|---|---|
| 名称 | SmilChr06G002019 |
| 描述 | uncharacterized SmilChr06G002019 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 26006024 - 26006886 / - |
| NCBI Gene ID | LOC130990687 |
|---|---|
| GeneID | 130990687 |
| locus_tag | - |
| NCBI Name | LOC130990687 |
| 原始查询 | LOC130990687 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=25; qcov=0.443; evalue=6.59e-09; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990687 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057770895.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057770895.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057770895.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770895.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770895.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:26006087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B139,B19,B32,C4 |
Chr6:26006095 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C40 |
Chr6:26006182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,C30,C40 |
Chr6:26006232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B26,C30,C37,C40 |
Chr6:26006234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,C30,C40 |
Chr6:26006269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,C30,C40 |
Chr6:26006278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,C49 |
Chr6:26006283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B26,C30,C37,C40 |
Chr6:26006305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B31,C17,C21,C79 |
Chr6:26006346 |
C |
T |
EMS_canonical_SNV | stop_gained | 21 | B101,B120,B126,B139,B28,B3,B33,B45,B58,B67,B69,B75,B8,B82,B89,C10,C14,C39,C41,C52,C55 |
Chr6:26006405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr6:26006576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B32,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。