当前解析结果
SmilChr06G002053| 统一新 Gene ID | SmilChr06G002053 |
|---|---|
| 名称 | SmilChr06G002053 |
| 描述 | uncharacterized SmilChr06G002053 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 27053630 - 27054346 / - |
| NCBI Gene ID | LOC130990699 |
|---|---|
| GeneID | 130990699 |
| locus_tag | - |
| NCBI Name | LOC130990699 |
| 原始查询 | LOC130990699 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=weak |
| 产物 | hit=Os12g0292200; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os12g0292200- identity=24.4; qcov=0.55; evalue=2.41e-09; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990699 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057770910.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057770910.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057770910.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770910.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770910.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:27053647 |
CA |
C |
1bp_deletion | frameshift_variant | 6 | A23,B134,B38,B42,B69,C33 |
Chr6:27053656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B126,B15,C60,D8 |
Chr6:27053706 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C60 |
Chr6:27053811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr6:27053870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr6:27053883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B119,B18,B43,C17,C64 |
Chr6:27053893 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A20,B17,B30,B85,B86,C18,C37,C4,C86,C9 |
Chr6:27053910 |
TG |
T |
1bp_deletion | frameshift_variant | 47 | A11,A15,A2,A5,B102,B119,B134,B24,B42,B43,B45,B57,B59,B66,B68,B73,B76,B79,B8,B80,B81,B87,B9,B91,B97,B99,C10,C11,C13,C14,C17,C20,C41,C52,C54,C6,C65,C7,C70,C72,C74,C81,D1,D2,D3,D5,D9 |
Chr6:27053922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B26,B39,C49 |
Chr6:27053936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:27053941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B17,B86,C37,C86 |
Chr6:27053975 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,A8,B84,B98 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。