Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003191`

染色体: Chr01 坐标: 50648992-50653114 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003191`
名称	SmilChr01G003191
描述	jasmonate ZIM domain-containing protein 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	50648992 - 50653114 / `-`

ID 对照

NCBI Gene ID	`LOC130990718`
GeneID	`130990718`
locus_tag	`-`
NCBI Name	`LOC130990718`
原始查询	`LOC130990718`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	jasmonate ZIM domain-containing protein 1-like
产物	jasmonate ZIM domain-containing protein 1-like
Arabidopsis	`AT1G74950` (TIFY10B) TIFY domain/Divergent CCT motif family protein [Source:NCBI gene (formerly Entrezgene);Acc:843834] identity=29.6; qcov=0.896; evalue=1.15e-23; confidence=low
Rice	`Os03g0402800` (OsJAZ5) - identity=32.5; qcov=0.757; evalue=1.17e-22; confidence=low
GO	GO:0005634 (nucleus); GO:0009611 (response to wounding); GO:0031347 (regulation of defense response); GO:2000022 (regulation of jasmonic acid mediated signaling pathway)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF06200 (tify); PF09425 (Jas_motif)
InterPro	-
eggNOG	-
NR	GeneID:130990718

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770932.1`
2	Chromosome	染色体	0.00000	`XP_057770932.1`
3	Centromere	着丝粒	0.00000	`XP_057770932.1`
4	Chromatin	染色质	0.00000	`XP_057770932.1`
5	Telomere	端粒	0.00000	`XP_057770932.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:50649335`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:50649342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr1:50649454`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B129,B28
`Chr1:50649455`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B30,B94,C19
`Chr1:50649469`	`A`	`AC`	1bp_insertion	frameshift_variant	7	A16,B102,B137,C2,C25,C30,D3
`Chr1:50650020`	`AT`	`A`	1bp_deletion	frameshift_variant	16	A1,A18,A25,B115,B12,B14,B21,B44,B57,B97,C18,C31,C38,C50,C64,C66
`Chr1:50651237`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B121,B93
`Chr1:50651320`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:50651398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr1:50652302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr1:50652310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:50652313`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770932.1

285 aa

142

285

tify

Jas_motif

PF06200 tify 118-149 aa PF09425 Jas_motif 235-259 aa

XP_057770935.1

309 aa

154

309

tify

Jas_motif

PF06200 tify 107-138 aa PF09425 Jas_motif 224-248 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770932.1`	Pfam	`PF06200`	tify	Domain	118	149	1.3e-15	57.1	tify domain
`XP_057770932.1`	Pfam	`PF09425`	Jas_motif	Motif	235	259	9.3e-13	48.4	Jas motif
`XP_057770935.1`	Pfam	`PF06200`	tify	Domain	107	138	1.6e-15	56.9	tify domain
`XP_057770935.1`	Pfam	`PF09425`	Jas_motif	Motif	224	248	8.7e-13	48.5	Jas motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057914952.1
GGAGCTCGTGTTTAATCCAGATATGTCCTTTTTCCCTTTTCACAAGGTCCACCATTTTCTTGGATTTATATGTATACCACATGCTGTATATTGTAGTTGTAGACCACTAGAACCCCCTACCCCCCTTCTCACTTTATCTCAACTCTCAATTATCACGTGCTCAATTCATCCATTAAAGACACCTTTTTCTCTATCACACAAATTCAAAAAATATTAGACTTATTCAAGCACAAGAATTTGGTTAAAACTATTCCAACTGT...

XM_057914949.1
TCTATCACACAAATTCAAAAAATATTAGACTTATTCAAGCACAAGAATTTGGTTAAAACTATTCCAACTGTTTGTCCGCCTAACTTCCCTTTTCCCATTTACTCCCAAATTTGTTTCCCCAACTTTTAAATAGGAGCATTCATCAACCACAATTTTCAGCTCAAAACATCTGCCCAAGGAAGGCTCTTTTTCCCCCCTATTCAGTTTGTCATTTCGTCAAACATGTGGAGTACGAAGAACTCATCCCATGGCCAGGGGAA...

CDS

2 records

下载 CDS FASTA

LOC130990718
ATGTGGAGTACGAAGAACTCATCCCATGGCCAGGGGAAAGGGAAAGCGCTCGAGATATCGAATTTCGCCCAAACCTGCAATCTTCTCAGTCGGTACATGAAGGAGAAGGGCACGCTTCGAGATTTGAATCTCGAAATCGGTGGAAAAGTTGAAAGCCTCGAAGCTCTAGTGAAGCCTGGATCATCTCTTGTTGCGCCGACACCTGCGAGCTCCGATTTAGCGATAAACAGTGGGAAATCGGCGCATACGGCGTTGGAAAA...

LOC130990718
ATGTGGAGTACGAAGAACTCATCCCATGGCCAGGGGAAAGGGAAAGCGCTCGAGATATCGAATTTCGCCCAAACCTGCAATCTTCTCAGTCGGTACATGAAGGAGAAGGGCACGCTTCGAGATTTGAATCTCGAAATCGGTGGAAAAGTTGAAAGCCTCGAAGCTCTAGCTGGTAAAATCAGTTTTTTCCCTTTAATTTCAGTGAAGCCTGGATCATCTCTTGTTGCGCCGACACCTGCGAGCTCCGATTTAGCGATAAA...

Protein

2 records

下载 Protein FASTA

XP_057770932.1
MWSTKNSSHGQGKGKALEISNFAQTCNLLSRYMKEKGTLRDLNLEIGGKVESLEALAGKISFFPLISVKPGSSLVAPTPASSDLAINSGKSAHTALENPVDDASNKASTSKDGRSKDPKSAQLTIFYSGKVLVFDDFPADKVREVVHVAKKSSSKMSYGITSSGAVPERPNPVASTSGPREGLPPRPQGKQPVGISSNTCKERMSGSTNEAGPSSSEAREELSPTTSEGSGSDLPIARRSSLHRFLEKRKDRAAVRGPYH...

XP_057770935.1
MWSTKNSSHGQGKGKALEISNFAQTCNLLSRYMKEKGTLRDLNLEIGGKVESLEALVKPGSSLVAPTPASSDLAINSGKSAHTALENPVDDASNKASTSKDGRSKDPKSAQLTIFYSGKVLVFDDFPADKVREVVHVAKKSSSKMSYGITSSGAVPERPNPVASTSGPREGLPPRPQGKQPVGISSNTCKERMSGSTNEAGPSSSEAREELSPTTSEGSGSDLPIARRSSLHRFLEKRKDRAAVRGPYHNQDHIAPIFKG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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