Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003199`

染色体: Chr01 坐标: 50758930-50765314 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003199`
名称	SmilChr01G003199
描述	polyadenylate-binding protein-interacting protein 4-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	50758930 - 50765314 / `+`

ID 对照

NCBI Gene ID	`LOC130990789`
GeneID	`130990789`
locus_tag	`-`
NCBI Name	`LOC130990789`
原始查询	`LOC130990789`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polyadenylate-binding protein-interacting protein 4-like
产物	polyadenylate-binding protein-interacting protein 4-like
Arabidopsis	`AT3G14010` (CID4) CTC-interacting domain 4 [Source:NCBI gene (formerly Entrezgene);Acc:820615] identity=44.2; qcov=1.03; evalue=3e-126; confidence=medium
Rice	`Os02g0480900` (P0519B12.23-1) - identity=42.9; qcov=1.05; evalue=7.86e-115; confidence=medium
GO	GO:0003723 (RNA binding); GO:0010494 (cytoplasmic stress granule); GO:0034063 (stress granule assembly)
KEGG	-
Pfam	PF06741 (LsmAD); PF14438 (SM-ATX)
InterPro	-
eggNOG	-
NR	GeneID:130990789

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057771008.1`
2	Cytoplasmic granule	细胞质颗粒	1.00000	`XP_057771008.1`
3	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	1.00000	`XP_057771008.1`
4	P-body	P-body	1.00000	`XP_057771008.1`
5	Stress granule	Stress granule	0.60000	`XP_057771030.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:50760515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr1:50760722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,C20,C39
`Chr1:50761028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:50761174`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B85
`Chr1:50761174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr1:50761547`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,A23,B121,B93
`Chr1:50761573`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B126
`Chr1:50761573`	`TG`	`T`	1bp_deletion	CDS_variant	1	B126
`Chr1:50763012`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C72,C87
`Chr1:50763135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B131,B17,B55,C19,C2
`Chr1:50763143`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B17,B60,C19,C2
`Chr1:50763144`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B17,B60,C19,C2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771008.1

581 aa

290

581

SM-ATX

LsmAD

PF14438 SM-ATX 42-122 aa PF06741 LsmAD 198-268 aa

XP_057771013.1

581 aa

290

581

SM-ATX

LsmAD

PF14438 SM-ATX 42-122 aa PF06741 LsmAD 198-268 aa

XP_057771017.1

581 aa

290

581

SM-ATX

LsmAD

PF14438 SM-ATX 42-122 aa PF06741 LsmAD 198-268 aa

XP_057771024.1

581 aa

290

581

SM-ATX

LsmAD

PF14438 SM-ATX 42-122 aa PF06741 LsmAD 198-268 aa

XP_057771030.1

579 aa

290

579

SM-ATX

LsmAD

PF14438 SM-ATX 40-120 aa PF06741 LsmAD 196-266 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771008.1`	Pfam	`PF14438`	SM-ATX	Domain	42	122	3.3e-24	85.6	Ataxin 2 SM domain
`XP_057771008.1`	Pfam	`PF06741`	LsmAD	Domain	198	268	6.1e-26	91.4	LsmAD domain
`XP_057771013.1`	Pfam	`PF14438`	SM-ATX	Domain	42	122	3.3e-24	85.6	Ataxin 2 SM domain
`XP_057771013.1`	Pfam	`PF06741`	LsmAD	Domain	198	268	6.1e-26	91.4	LsmAD domain
`XP_057771017.1`	Pfam	`PF14438`	SM-ATX	Domain	42	122	3.3e-24	85.6	Ataxin 2 SM domain
`XP_057771017.1`	Pfam	`PF06741`	LsmAD	Domain	198	268	6.1e-26	91.4	LsmAD domain
`XP_057771024.1`	Pfam	`PF14438`	SM-ATX	Domain	42	122	3.3e-24	85.6	Ataxin 2 SM domain
`XP_057771024.1`	Pfam	`PF06741`	LsmAD	Domain	198	268	6.1e-26	91.4	LsmAD domain
`XP_057771030.1`	Pfam	`PF14438`	SM-ATX	Domain	40	120	3.3e-24	85.6	Ataxin 2 SM domain
`XP_057771030.1`	Pfam	`PF06741`	LsmAD	Domain	196	266	5.9e-26	91.4	LsmAD domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057915041.1
AATCACTGTATAGACAACCCTAATAAAAAAAATTAGGGTTTGCAAAAACAAAATCACTCCACAGTCCACATAGTTAACTGGTGGAGAAAGGGGCAAAGGAGTAAAACAAAATTCATCTGATTTCAAACCCGCTTCTTCCGCGAAATGCGAAGGCAGATCTCATTCGGGTCGGGTCTCCGGGTACCGTATATTTGCAGTTTTGCCAAATGCATATCACAATTAGTACCATTTCCTGATTCGGGCCCGGTTTTTTCGCGGCG...

XM_057915047.1
GTGGAGAAAGGGGCAAAGGAGTAAAACAAAATTCATCTGATTTCAAACCCGCTTCTTCCGCGAAATGCGAAGGCAGATCTCATTCGGGTCGGGTCTCCGGGTACCGTATATTTGCAGTTTTGCCAAATGCATATCACAATTAGTACCATTTCCTGATTCGGGCCCGGTTTTTTCGCGGCGGTAGCCCTCAAACTACAAACTGCAACGACGTCGCTTTATTGTTTCGATCAAACCCTTCTCCGAGGTTGCCTCTCTGTCTA...

CDS

5 records

下载 CDS FASTA

LOC130990789
ATGAATACGCAGCAAGCTGTGCCACCCAGATCCTCTTCTAACGGACATGGTCACCATAAAATTGAAGGAGATACTGCAACAAGCTTCAATAGTGTAGGAGAATCCCATGAATCAAATTCTTGTGATAGACTTATATATTTAACTACATGCCTCATTGGGCATCAAGTGGAAGTACAGGTGCATGATGGATCTGTATTTTCTGGAATCTTTCATGCTATCAGCGGGGATGATTATGGAGTTATTCTGAAAATGGCATACTC...

Protein

5 records

下载 Protein FASTA

XP_057771008.1
MNTQQAVPPRSSSNGHGHHKIEGDTATSFNSVGESHESNSCDRLIYLTTCLIGHQVEVQVHDGSVFSGIFHAISGDDYGVILKMAYSVKIGSQGKKNISDSSKPPSKTLIIPARDLVQVIAKDVPVIRDGFLSELQREKQQELMTDSCISQSRHVEAGRELERWVPDEDDPGCPELENIFDGPWNRGWDQFEVNKTLFGVKSTFDEELYTTKLDRGPQTRELEREALKIAREIEGEQTLDIHLAEERGIQVDGNIEMDEE...

XP_057771013.1
MNTQQAVPPRSSSNGHGHHKIEGDTATSFNSVGESHESNSCDRLIYLTTCLIGHQVEVQVHDGSVFSGIFHAISGDDYGVILKMAYSVKIGSQGKKNISDSSKPPSKTLIIPARDLVQVIAKDVPVIRDGFLSELQREKQQELMTDSCISQSRHVEAGRELERWVPDEDDPGCPELENIFDGPWNRGWDQFEVNKTLFGVKSTFDEELYTTKLDRGPQTRELEREALKIAREIEGEQTLDIHLAEERGIQVDGNIEMDEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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