当前解析结果
SmilChr06G002540| 统一新 Gene ID | SmilChr06G002540 |
|---|---|
| 名称 | SmilChr06G002540 |
| 描述 | uncharacterized SmilChr06G002540 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 36418599 - 36422885 / - |
| NCBI Gene ID | LOC130990844 |
|---|---|
| GeneID | 130990844 |
| locus_tag | - |
| NCBI Name | LOC130990844 |
| 原始查询 | LOC130990844 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=28.6; qcov=0.304; evalue=6.51e-45; confidence=low |
| Rice | Os06g0484800- identity=30.2; qcov=0.571; evalue=4.64e-106; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990844 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771059.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057771059.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057771059.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771059.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771059.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:36418613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,C74,D8 |
Chr6:36418622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B33,B66 |
Chr6:36418627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C51,C74 |
Chr6:36418629 |
GA |
G |
1bp_deletion | frameshift_variant | 13 | B106,B118,B140,B15,B47,B67,C13,C22,C40,C60,C61,C63,D7 |
Chr6:36418634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B33,B66 |
Chr6:36418641 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B29,B60,C1 |
Chr6:36418644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B33,B56,B96,D4 |
Chr6:36418645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B135,B3,B45,C86 |
Chr6:36418661 |
CT |
C |
1bp_deletion | frameshift_variant | 9 | A10,A25,B20,B23,B27,B61,C40,C54,C72 |
Chr6:36418662 |
T |
TA |
1bp_insertion | frameshift_variant | 129 | A1,A14,A18,A19,A2,A20,A21,A22,A23,A25,A5,A9,B1,B100,B104,B106,B107,B109,B11,B111,B114,B115,B117,B118,B121,B122,B124,B125,B127,B128,B129,B13,B131,B135,B138,B139,B140,B15,B17,B18,B24,B25,B27,B29,B3,B31,B32,B33,B35,B36,B37,B38,B41,B45,B47,B5,B51,B53,B56,B57,B58,B6,B60,B61,B65,B66,B67,B7,B70,B71,B73,B76,B78,B79,B81,B87,B89,B90,B91,B96,B97,B98,C1,C12,C13,C16,C19,C2,C20,C22,C23,C24,C25,C29,C3,C30,C36,C43,C44,C46,C48,C49,C51,C54,C55,C6,C60,C61,C62,C63,C67,C68,C7,C71,C74,C77,C8,C80,C82,C83,C84,C86,C87,C9,D11,D4,D6,D7,D8 |
Chr6:36418668 |
AAC |
A |
2bp_deletion | frameshift_variant | 5 | B107,B33,B56,B96,D4 |
Chr6:36418668 |
AAC |
A |
2bp_deletion | CDS_variant | 5 | B107,B33,B56,B96,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771059.1PF00078
RVT_1 395-656 aa
PF13966
zf-RVT 913-992 aa
PF13456
RVT_3 1122-1241 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771059.1 |
Pfam | PF00078 |
RVT_1 | Domain | 395 | 656 | 9.1e-30 | 104.8 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057771059.1 |
Pfam | PF13966 |
zf-RVT | Domain | 913 | 992 | 1.8e-18 | 67.7 | zinc-binding in reverse transcriptase |
XP_057771059.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1122 | 1241 | 2.9e-13 | 50.5 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。