Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003206`

染色体: Chr01 坐标: 50815771-50847490 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003206`
名称	SmilChr01G003206
描述	midasin
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	50815771 - 50847490 / `-`

ID 对照

NCBI Gene ID	`LOC130990847`
GeneID	`130990847`
locus_tag	`-`
NCBI Name	`LOC130990847`
原始查询	`LOC130990847`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	midasin
产物	midasin
Arabidopsis	`AT1G67120` (AT1G67120) midasin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:843032] identity=45.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os10g0456900` - identity=51.4; qcov=0.097; evalue=8.89e-155; confidence=weak
GO	GO:0000027 (ribosomal large subunit assembly); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006364 (rRNA processing); GO:0016887 (ATP hydrolysis activity); GO:0030687 (preribosome, large subunit precursor)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF07726 (AAA_3); PF07728 (AAA_5); PF17865 (AAA_lid_5); PF17867 (AAA_lid_7); PF21108 (MDN1_4th)
InterPro	-
eggNOG	-
NR	GeneID:130990847

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057771062.1`
2	Cytosol	细胞质基质	0.40000	`XP_057771062.1`
3	Nucleus	细胞核	0.20000	`XP_057771067.1`
4	Chromosome	染色体	0.00000	`XP_057771062.1`
5	Centromere	着丝粒	0.00000	`XP_057771062.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:50816260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,A23,B90,B92,B93
`Chr1:50816483`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,C20,C39,D4
`Chr1:50816686`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C10,C50,C61,D4,D5
`Chr1:50816764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:50816970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr1:50817127`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,B68
`Chr1:50817495`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr1:50817569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:50817815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B56,B96,C43,C62,D7
`Chr1:50817861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,B113,B24,B3,B33
`Chr1:50817919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr1:50817944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771062.1

5395 aa

2698

5395

AAA_5

AAA_lid_7

AAA_5

AAA_lid_5

AAA_5

AAA_lid_7

AAA_5

MDN1_4th

AAA_5

AAA_3

AAA_lid_7

PF07728 AAA_5 351-473 aa PF17867 AAA_lid_7 500-608 aa PF07728 AAA_5 673-719 aa PF07728 AAA_5 821-908 aa PF17865 AAA_lid_5 921-1022 aa PF07728 AAA_5 1073-1209 aa PF17867 AAA_lid_7 1221-1317 aa PF07728 AAA_5 1502-1595 aa PF21108 MDN1_4th 1605-1680 aa PF07728 AAA_5 1791-1930 aa PF07726 AAA_3 1792-1930 aa PF17867 AAA_lid_7 1945-2040 aa

XP_057771067.1

5391 aa

2696

5391

AAA_5

AAA_lid_7

AAA_5

AAA_lid_5

AAA_5

AAA_lid_7

AAA_5

MDN1_4th

AAA_5

AAA_3

AAA_lid_7

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771062.1`	Pfam	`PF07728`	AAA_5	Domain	351	473	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771062.1`	Pfam	`PF17867`	AAA_lid_7	Domain	500	608	2.2e-56	189.4	Midasin AAA lid domain
`XP_057771062.1`	Pfam	`PF07728`	AAA_5	Domain	673	719	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771062.1`	Pfam	`PF07728`	AAA_5	Domain	821	908	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771062.1`	Pfam	`PF17865`	AAA_lid_5	Domain	921	1022	3.7e-26	92.1	Midasin AAA lid domain
`XP_057771062.1`	Pfam	`PF07728`	AAA_5	Domain	1073	1209	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771062.1`	Pfam	`PF17867`	AAA_lid_7	Domain	1221	1317	2.2e-56	189.4	Midasin AAA lid domain
`XP_057771062.1`	Pfam	`PF07728`	AAA_5	Domain	1502	1595	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771062.1`	Pfam	`PF21108`	MDN1_4th	Domain	1605	1680	1.3e-09	38.6	Midasin AAA+ ATPase lid domain
`XP_057771062.1`	Pfam	`PF07728`	AAA_5	Domain	1791	1930	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771062.1`	Pfam	`PF07726`	AAA_3	Domain	1792	1930	5e-27	95.1	ATPase family associated with various cellular activities (AAA)
`XP_057771062.1`	Pfam	`PF17867`	AAA_lid_7	Domain	1945	2040	2.2e-56	189.4	Midasin AAA lid domain
`XP_057771067.1`	Pfam	`PF07728`	AAA_5	Domain	351	473	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771067.1`	Pfam	`PF17867`	AAA_lid_7	Domain	500	608	2.2e-56	189.4	Midasin AAA lid domain
`XP_057771067.1`	Pfam	`PF07728`	AAA_5	Domain	673	719	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771067.1`	Pfam	`PF07728`	AAA_5	Domain	821	908	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771067.1`	Pfam	`PF17865`	AAA_lid_5	Domain	921	1022	3.7e-26	92.1	Midasin AAA lid domain
`XP_057771067.1`	Pfam	`PF07728`	AAA_5	Domain	1073	1209	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771067.1`	Pfam	`PF17867`	AAA_lid_7	Domain	1221	1317	2.2e-56	189.4	Midasin AAA lid domain
`XP_057771067.1`	Pfam	`PF07728`	AAA_5	Domain	1502	1595	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771067.1`	Pfam	`PF21108`	MDN1_4th	Domain	1605	1680	1.3e-09	38.6	Midasin AAA+ ATPase lid domain
`XP_057771067.1`	Pfam	`PF07728`	AAA_5	Domain	1791	1930	3.3e-112	371.3	AAA domain (dynein-related subfamily)
`XP_057771067.1`	Pfam	`PF07726`	AAA_3	Domain	1792	1930	5e-27	95.1	ATPase family associated with various cellular activities (AAA)
`XP_057771067.1`	Pfam	`PF17867`	AAA_lid_7	Domain	1945	2040	2.2e-56	189.4	Midasin AAA lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915084.1
ACCCCTTTCTCTTCCAAGGAAGGAGCTTTGGAGACAATTAACATCTTCAGTAGTGAATTCAAGAGAAATTCCTCCCGGAATCAGAAAACTTTAAGAAATTAAGAAGAAACCTCAAATATAGCTATATTCAAAGTTCTGAATGGCGGTTGACGGGAGCTTTTCACTTGAATCGGAACTACGGAGGTTTCTTGATCGTTGTCCGAAGCTCAAGTCAGTTCCCAGCTTCGGTAATTTGCTAGAGAAGGGTGACAAAATCACAG...

XM_057915079.1
ACCCCTTTCTCTTCCAAGGAAGGAGCTTTGGAGACAATTAACATCTTCAGTAGTGAATTCAAGAGAAATTCCTCCCGGAATCAGAAAACTTTAAGAAATTAAGAAGAAACCTCAAATATAGCTATATTCAAAGTTCTGAATGGCGGTTGACGGGAGCTTTTCACTTGAATCGGAACTACGGAGGTTTCTTGATCGTTGTCCGAAGCTCAAGTCAGTTCCCAGCTTCGGTAATTTGCTAGAGAAGGGTGACAAAATCACAG...

CDS

2 records

下载 CDS FASTA

LOC130990847
ATGGCGGTTGACGGGAGCTTTTCACTTGAATCGGAACTACGGAGGTTTCTTGATCGTTGTCCGAAGCTCAAGTCAGTTCCCAGCTTCGGTAATTTGCTAGAGAAGGGTGACAAAATCACAGAAGATGAGGTGGTGCTGGCGGTGGGAGAACTGGTTCTGCACCCAAATTACACAATTCCGTTGCTGGGATGCTTCAGGCCTATAGCACAGAAGATTGTTGAGAGGAGTGTGCATTTGCTTCACTTGGTGCCGAATTTGAG...

Protein

2 records

下载 Protein FASTA

XP_057771062.1
MAVDGSFSLESELRRFLDRCPKLKSVPSFGNLLEKGDKITEDEVVLAVGELVLHPNYTIPLLGCFRPIAQKIVERSVHLLHLVPNLRSDDDSNAEGFDEEEFLREDENVDSPEVAHVIDVYVRRRKALRLHELACLAFCRALDLIPLLLGSILNYFKVAPSPFERIVQCTSVSKALSGGPSQLLNVVRASYRFLILEPAVFTTLWDWSCFLDIVQQSADLTLVNDAMLRNILFDMRWCSVGIVSRALRLSFKASANLNTD...

XP_057771067.1
MAVDGSFSLESELRRFLDRCPKLKSVPSFGNLLEKGDKITEDEVVLAVGELVLHPNYTIPLLGCFRPIAQKIVERSVHLLHLVPNLRSDDDSNAEGFDEEEFLREDENVDSPEVAHVIDVYVRRRKALRLHELACLAFCRALDLIPLLLGSILNYFKVAPSPFERIVQCTSVSKALSGGPSQLLNVVRASYRFLILEPAVFTTLWDWSCFLDIVQQSADLTLVNDAMLRNILFDMRWCSVGIVSRALRLSFKASANLNTD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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