当前解析结果
SmilChr06G002734| 统一新 Gene ID | SmilChr06G002734 |
|---|---|
| 名称 | SmilChr06G002734 |
| 描述 | uncharacterized SmilChr06G002734 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 39562681 - 39564360 / - |
| NCBI Gene ID | LOC130990900 |
|---|---|
| GeneID | 130990900 |
| locus_tag | - |
| NCBI Name | LOC130990900 |
| 原始查询 | LOC130990900 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=29.3; qcov=0.488; evalue=4.86e-28; confidence=low |
| Rice | Os12g0156200- identity=32; qcov=0.184; evalue=1.92e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF14111 (DUF4283) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990900 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771111.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057771111.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057771111.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057771111.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057771111.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:39562796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:39562811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B14,B98,C10,C35 |
Chr6:39562825 |
GTA |
G |
2bp_deletion | frameshift_variant | 80 | A10,A14,A18,A19,A2,A22,A3,A4,A5,A8,B1,B105,B109,B11,B113,B114,B120,B125,B132,B136,B15,B18,B19,B21,B28,B3,B32,B33,B36,B38,B39,B4,B44,B46,B48,B51,B52,B53,B55,B59,B6,B62,B66,B68,B70,B74,B76,B77,B87,B88,B89,B9,B90,B91,B92,B97,B99,C21,C24,C26,C28,C31,C35,C37,C44,C47,C49,C53,C55,C56,C63,C64,C65,C68,C7,C8,C85,C86,C9,D4 |
Chr6:39562828 |
A |
AGG |
2bp_insertion | frameshift_variant | 79 | A10,A14,A18,A19,A2,A22,A3,A4,A5,A8,B1,B105,B109,B11,B113,B114,B120,B125,B132,B136,B15,B18,B19,B21,B28,B3,B32,B33,B36,B38,B39,B4,B44,B46,B48,B51,B52,B53,B55,B59,B6,B62,B66,B68,B70,B74,B76,B77,B87,B88,B89,B9,B90,B91,B92,B97,B99,C21,C24,C26,C28,C31,C35,C37,C44,C47,C49,C53,C55,C56,C63,C64,C65,C7,C8,C85,C86,C9,D4 |
Chr6:39562840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:39562859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr6:39562899 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | B121,B14,C19 |
Chr6:39562899 |
GA |
G |
1bp_deletion | CDS_variant | 3 | B121,B14,C19 |
Chr6:39562904 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | B121,B14 |
Chr6:39562904 |
T |
TC |
1bp_insertion | CDS_variant | 2 | B121,B14 |
Chr6:39562914 |
CCG |
C |
2bp_deletion | frameshift_variant | 1 | B121 |
Chr6:39562914 |
CCG |
C |
2bp_deletion | CDS_variant | 1 | B121 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771111.1PF14111
DUF4283 70-155 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771111.1 |
Pfam | PF14111 |
DUF4283 | Domain | 70 | 155 | 2.5e-08 | 34.2 | Domain of unknown function (DUF4283) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。