Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003213`

染色体: Chr01 坐标: 50903496-50910898 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003213`
名称	SmilChr01G003213
描述	putative late blight resistance protein homolog R1B-17
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	50903496 - 50910898 / `-`

ID 对照

NCBI Gene ID	`LOC130990919`
GeneID	`130990919`
locus_tag	`-`
NCBI Name	`LOC130990919`
原始查询	`LOC130990919`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-17
产物	putative late blight resistance protein homolog R1B-17
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.5; qcov=0.972; evalue=1.27e-63; confidence=low
Rice	`Os11g0633500` - identity=38.1; qcov=0.493; evalue=4.86e-72; confidence=medium
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP)
InterPro	-
eggNOG	-
NR	GeneID:130990919

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057771133.1`
2	Cytosol	细胞质基质	0.40000	`XP_057771141.1`
3	Nucleus	细胞核	0.00000	`XP_057771133.1`
4	Chromosome	染色体	0.00000	`XP_057771133.1`
5	Centromere	着丝粒	0.00000	`XP_057771133.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:50904439`	`CCT`	`C`	2bp_deletion	frameshift_variant	85	A14,A15,A20,A3,A7,B1,B10,B100,B104,B105,B107,B108,B109,B11,B119,B120,B121,B125,B131,B133,B134,B135,B136,B137,B139,B17,B18,B25,B26,B29,B31,B37,B4,B40,B42,B47,B5,B56,B63,B67,B69,B7,B71,B72,B73,B76,B8,B84,B85,B9,B90,B92,B93,B96,B98,C16,C2,C20,C23,C24,C30,C31,C33,C34,C36,C39,C4,C42,C47,C52,C55,C57,C6,C63,C70,C73,C74,C81,C85,D1,D10,D3,D4,D7,D9
`Chr1:50904572`	`CAG`	`C`	2bp_deletion	frameshift_variant	87	A14,A19,A21,A7,B100,B105,B107,B108,B11,B117,B121,B123,B124,B125,B126,B131,B134,B135,B136,B140,B18,B25,B3,B30,B32,B35,B37,B42,B43,B47,B56,B57,B69,B7,B73,B75,B76,B78,B79,B8,B85,B87,B88,B89,B9,B90,B92,B93,B94,B95,B96,C11,C16,C20,C23,C24,C29,C3,C39,C43,C45,C55,C57,C59,C60,C62,C63,C64,C65,C66,C69,C70,C74,C77,C8,C80,C82,C83,C84,C85,C86,C87,D10,D2,D4,D8,D9
`Chr1:50904591`	`A`	`AGG`	2bp_insertion	frameshift_variant	22	A20,A3,B1,B104,B107,B118,B120,B125,B139,B29,B40,B71,B72,B77,B84,B90,B92,B98,C33,C4,C47,C52
`Chr1:50904761`	`ATT`	`A`	2bp_deletion	frameshift_variant	2	B84,B98
`Chr1:50904761`	`ATT`	`A`	2bp_deletion	CDS_variant	2	B84,B98
`Chr1:50904762`	`TTC`	`*`	2bp_deletion	CDS_variant	2	B84,B98
`Chr1:50905197`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B86,C44
`Chr1:50905375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr1:50905441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:50905591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr1:50905670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B75
`Chr1:50905718`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771133.1

858 aa

429

858

NB-ARC

WHD_DRP

PF00931 NB-ARC 152-309 aa PF23559 WHD_DRP 394-464 aa

XP_057771136.1

851 aa

426

851

NB-ARC

WHD_DRP

PF00931 NB-ARC 142-299 aa PF23559 WHD_DRP 384-454 aa

XP_057771141.1

718 aa

359

718

NB-ARC

WHD_DRP

PF00931 NB-ARC 13-177 aa PF23559 WHD_DRP 262-332 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771133.1`	Pfam	`PF00931`	NB-ARC	Domain	152	309	3.6e-37	128.3	NB-ARC domain
`XP_057771133.1`	Pfam	`PF23559`	WHD_DRP	Domain	394	464	6.3e-19	68.5	Disease resistance protein Winged helix domain
`XP_057771136.1`	Pfam	`PF00931`	NB-ARC	Domain	142	299	3.6e-37	128.3	NB-ARC domain
`XP_057771136.1`	Pfam	`PF23559`	WHD_DRP	Domain	384	454	6.2e-19	68.5	Disease resistance protein Winged helix domain
`XP_057771141.1`	Pfam	`PF00931`	NB-ARC	Domain	13	177	3.4e-43	147.9	NB-ARC domain
`XP_057771141.1`	Pfam	`PF23559`	WHD_DRP	Domain	262	332	9.8e-20	71.1	Disease resistance protein Winged helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009090979.1
AACACTTTCCGGGCCTAAATTCAAGTGTGAGAGGATTCTTTCTTCTTCATTCTTCAGGACCCCATCAATGCTTTCAGACTTGTTCAACAGGATCTCTTTAACACTGCTCTCGTGTTCGTGCAAGCTCTTAATCTAGTTTGAAATAATTTCTTGATGTACAACAGAAAAATCAAGCTGTGAAAACTATGAGGGCGAGGCTAAGAAAATATTGACTCTGCAAATTCTTAAAATTAGACCTTGATGGCTCCATACTGGGAAGT...

XM_057915150.1
AACACTTTCCGGGCCTAAATTCAAGTGTGAGAGGATTCTTTCTTCTTCATTCTTCAGGACCCCATCAATGCTTTCAGACTTGTTCAACAGGATCTCTTTAACACTGCTCTCGTGTTCGTGCAAGCTCTTAATCTAGTTTGAAATAATTTCTTGATGTACAACAGAAAAATCAAGCTGTGAAAACTATGAGGGCGAGGCTAAGAAAATATTGACTCTGCAAATTCTTAAAATTAGACCTTGATGGCTCCATACTGGGAAGT...

CDS

3 records

下载 CDS FASTA

LOC130990919
ATGGCGGCTTATGCAGCTCTGGTTTCTGTTATGCATATCATAGATAACCTTCAACTTCATCCTCGCCCTCCTATTTCTCTCCACACTAAACAAGTTGAGTCTCTCACTCAAAAGGTTACTTTCCTTCAAGAATTTCTCGAAGGCTACAACCCTCATCTTGGCTACAGCACAGAAGCGGACTCTTTGGAGAGTCGCATTGCAGATGCAGCTTATGCAGCCGAAGACGTCATTGAATCTCATATTGTGGATCAGATCACAAA...

LOC130990919
ATGCATATCATAGATAACCTTCAACTTCATCCTCGCCCTCCTATTTCTCTCCACACTAAACAAGTTGAGTCTCTCACTCAAAAGGTTACTTTCCTTCAAGAATTTCTCGAAGGCTACAACCCTCATCTTGGCTACAGCACAGAAGCGGACTCTTTGGAGAGTCGCATTGCAGATGCAGCTTATGCAGCCGAAGACGTCATTGAATCTCATATTGTGGATCAGATCACAAATGGTGCGGAGAAGATAAGCTCCGATGGCTT...

Protein

3 records

下载 Protein FASTA

XP_057771133.1
MAAYAALVSVMHIIDNLQLHPRPPISLHTKQVESLTQKVTFLQEFLEGYNPHLGYSTEADSLESRIADAAYAAEDVIESHIVDQITNGAEKISSDGLYEALEKVIQDMALIEKEAMGVEHQLHRNSTPSDSQRSSSNALNSSMVGVEDVKLQMMDMLTSNSQDLLIIPIVGMGGTGKTTLARNIYQERLTTEHFDICAWATISQEYSVREIYAEVLGVDHNLSELELGEKLHKHLYGRRYLIVMDDMWSIDAWDRVRNHF...

XP_057771136.1
MHIIDNLQLHPRPPISLHTKQVESLTQKVTFLQEFLEGYNPHLGYSTEADSLESRIADAAYAAEDVIESHIVDQITNGAEKISSDGLYEALEKVIQDMALIEKEAMGVEHQLHRNSTPSDSQRSSSNALNSSMVGVEDVKLQMMDMLTSNSQDLLIIPIVGMGGTGKTTLARNIYQERLTTEHFDICAWATISQEYSVREIYAEVLGVDHNLSELELGEKLHKHLYGRRYLIVMDDMWSIDAWDRVRNHFPDIKNGSRIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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