Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G002003`

染色体: Chr06 坐标: 25692504-25696247 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G002003`
名称	SmilChr06G002003
描述	probable LRR receptor-like serine/threonine-protein kinase At4g37250
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	25692504 - 25696247 / `+`

ID 对照

NCBI Gene ID	`LOC130990951`
GeneID	`130990951`
locus_tag	`-`
NCBI Name	`LOC130990951`
原始查询	`LOC130990951`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At4g37250
产物	probable LRR receptor-like serine/threonine-protein kinase At4g37250
Arabidopsis	`AT4G37250` (AT4G37250) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829879] identity=56.7; qcov=0.965; evalue=0; confidence=high
Rice	`Os09g0110100` - identity=47.6; qcov=0.991; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2)
InterPro	-
eggNOG	-
NR	GeneID:130990951

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057771152.1`
2	Nucleus	细胞核	0.00000	`XP_057771152.1`
3	Chromosome	染色体	0.00000	`XP_057771152.1`
4	Centromere	着丝粒	0.00000	`XP_057771152.1`
5	Chromatin	染色质	0.00000	`XP_057771152.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:25692989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr6:25693032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B136,C82,C83
`Chr6:25693182`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr6:25693354`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B136,C82,C83
`Chr6:25693414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:25693525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B122,B140,B2,B37,D2
`Chr6:25693538`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr6:25693541`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B137,B55,C2
`Chr6:25693542`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B5
`Chr6:25693542`	`GC`	`G`	1bp_deletion	CDS_variant	1	B5
`Chr6:25693606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr6:25693620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771152.1

780 aa

390

780

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 31-70 aa PF00560 LRR_1 105-124 aa PF00560 LRR_1 131-152 aa PF00560 LRR_1 155-176 aa PF00560 LRR_1 200-220 aa PF00560 LRR_1 222-242 aa PF00069 Pkinase 468-620 aa PF07714 PK_Tyr_Ser-Thr 483-620 aa PF00069 Pkinase 653-765 aa PF07714 PK_Tyr_Ser-Thr 661-766 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771152.1`	Pfam	`PF08263`	LRRNT_2	Family	31	70	1.1e-13	51.9	Leucine rich repeat N-terminal domain
`XP_057771152.1`	Pfam	`PF00560`	LRR_1	Repeat	105	124	5.4e-22	73.9	Leucine Rich Repeat
`XP_057771152.1`	Pfam	`PF00560`	LRR_1	Repeat	131	152	5.4e-22	73.9	Leucine Rich Repeat
`XP_057771152.1`	Pfam	`PF00560`	LRR_1	Repeat	155	176	5.4e-22	73.9	Leucine Rich Repeat
`XP_057771152.1`	Pfam	`PF00560`	LRR_1	Repeat	200	220	5.4e-22	73.9	Leucine Rich Repeat
`XP_057771152.1`	Pfam	`PF00560`	LRR_1	Repeat	222	242	5.4e-22	73.9	Leucine Rich Repeat
`XP_057771152.1`	Pfam	`PF00069`	Pkinase	Domain	468	620	8e-28	98.3	Protein kinase domain
`XP_057771152.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	483	620	1.7e-26	93.8	Protein tyrosine and serine/threonine kinase
`XP_057771152.1`	Pfam	`PF00069`	Pkinase	Domain	653	765	8e-28	98.3	Protein kinase domain
`XP_057771152.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	661	766	1.7e-26	93.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915169.1
CATTAAAAAAAATATGGATACCAAAAATTGGTACGAATAGACTAATATAAATCGAAATTAGAAAATTATCATAGAATAAAAATTCGAATTACTCCCTCCGTCCCATGAAGGAAGGCCAAGTTTTCGTTTTGATTTGTCTCACGAAGCAAGATCAGTTTCTAAAAGTAGCAAAAAATTTACTCTTTATTAACCTTTTCACTTTTTCATCTACCACACTTAACACAAAAAATACAAATTTCTTAATTTCCGTTCTGAAAAGA...

CDS

1 records

下载 CDS FASTA

LOC130990951
ATGAGCTCTGTTGACCCTGAGCTCCTCCGTCTGTGGCGGTGGAGGATTCTCGCGACGGTGCTTCTCATTCGGGCCGAGTCGTTCGGGCTGAGCAGCGACGGCGTGGCGCTGCTGTCGTTCAAGTACAACGTTCTCAGCGATCCTTTCGGGGTTTTGCAGAGCTGGAATTACAGCGACGCCACGCCGTGCTCGTGGAATGGAGTCTCTTGCGGCACTCCGGGCTCCGCCGACGCCTATTTCCGAGTCACGGCCCTCTCGCT...

Protein

1 records

下载 Protein FASTA

XP_057771152.1
MSSVDPELLRLWRWRILATVLLIRAESFGLSSDGVALLSFKYNVLSDPFGVLQSWNYSDATPCSWNGVSCGTPGSADAYFRVTALSLPNSGLLGSIPSTLGAIPHLRTLNLANNSINGSIPASLFAAISELQSLDFSNNLISGELPPLLGNLQFLRVLNLSDNALAGNLPANLSALRNLTAVSLRSNYFSGEIPGGFSSVRFLDLSSNLINGSLPENFGGANLEYLNVSFNRISGKIPPGFAAGIPVNATIDLSSNDLTG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器