当前解析结果
SmilChr06G002960| 统一新 Gene ID | SmilChr06G002960 |
|---|---|
| 名称 | SmilChr06G002960 |
| 描述 | uncharacterized SmilChr06G002960 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42393830 - 42394441 / + |
| NCBI Gene ID | LOC130990979 |
|---|---|
| GeneID | 130990979 |
| locus_tag | - |
| NCBI Name | LOC130990979 |
| 原始查询 | LOC130990979 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28717339]; symbol=AT1G48720; hit=AT1G48720; species=arabidopsis; confidence=medium |
| 产物 | Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28717339]; symbol=AT1G48720; hit=AT1G48720; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G48720 (AT1G48720)Copia-like polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28717339] identity=54.3; qcov=0.463; evalue=1.55e-32; confidence=medium |
| Rice | Os08g0125300- identity=29.7; qcov=0.961; evalue=7.8e-29; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF13961 (DUF4219); PF14223 (Retrotran_gag_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990979 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057771171.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057771171.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771171.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771171.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771171.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42393869 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B24,B72,C10,C81 |
Chr6:42393869 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B24,B72,C10,C81 |
Chr6:42393878 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B27,B38,B39,B54,C54 |
Chr6:42393878 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B27,B38,B39,B54,C54 |
Chr6:42393907 |
G |
A |
EMS_canonical_SNV | stop_gained | 37 | A16,A18,A24,B1,B101,B105,B12,B120,B121,B124,B125,B15,B2,B32,B45,B46,B57,B60,B61,B7,B70,B84,B85,B90,B92,B94,C14,C17,C19,C28,C51,C61,C65,C74,C87,D1,D6 |
Chr6:42393948 |
G |
A |
EMS_canonical_SNV | stop_gained | 11 | A6,B14,B15,B38,B39,B41,B44,B45,B97,B99,D7 |
Chr6:42394007 |
C |
T |
EMS_canonical_SNV | stop_gained | 83 | A1,A13,A14,A16,A18,A19,A21,A25,A4,A5,A9,B100,B11,B111,B117,B121,B122,B123,B128,B129,B13,B130,B132,B133,B137,B138,B139,B17,B18,B21,B48,B5,B54,B59,B6,B61,B62,B63,B64,B67,B74,B82,B83,B85,B86,B88,B9,B91,B98,C1,C11,C17,C21,C24,C26,C29,C3,C30,C34,C43,C47,C5,C50,C53,C59,C6,C62,C63,C64,C66,C67,C69,C7,C70,C76,C80,C82,C84,C86,C87,C9,D3,D5 |
Chr6:42394021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C77 |
Chr6:42394055 |
AC |
A |
1bp_deletion | frameshift_variant | 3 | B122,B93,D10 |
Chr6:42394055 |
AC |
A |
1bp_deletion | CDS_variant | 3 | B122,B93,D10 |
Chr6:42394056 |
C |
CTA |
2bp_insertion | frameshift_variant | 6 | A15,B36,B95,C1,C15,C27 |
Chr6:42394087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771171.1PF13961
DUF4219 22-44 aa
PF14223
Retrotran_gag_2 30-201 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771171.1 |
Pfam | PF13961 |
DUF4219 | Domain | 22 | 44 | 3.7e-08 | 33.6 | Domain of unknown function (DUF4219) |
XP_057771171.1 |
Pfam | PF14223 |
Retrotran_gag_2 | Domain | 30 | 201 | 1.1e-29 | 104.0 | gag-polypeptide of LTR copia-type |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。