当前解析结果
SmilChr06G002972| 统一新 Gene ID | SmilChr06G002972 |
|---|---|
| 名称 | SmilChr06G002972 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 42554090 - 42556657 / + |
| NCBI Gene ID | LOC130990984 |
|---|---|
| GeneID | 130990984 |
| locus_tag | - |
| NCBI Name | LOC130990984 |
| 原始查询 | LOC130990984 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=27.1; qcov=1.09; evalue=2.91e-72; confidence=low |
| Rice | Os07g0186500- identity=29.5; qcov=0.935; evalue=1.44e-78; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990984 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057771176.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057771176.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771176.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771176.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771176.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:42554143 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,C34,C74,D3 |
Chr6:42554177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B40,B61 |
Chr6:42554194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B53 |
Chr6:42554244 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C2,C56 |
Chr6:42554329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,C59 |
Chr6:42554355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B52,C34,C74,D3 |
Chr6:42554461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C74,D3 |
Chr6:42554522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr6:42554642 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B80 |
Chr6:42554645 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B131,B90,C23 |
Chr6:42554664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C23 |
Chr6:42554669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771176.1PF00931
NB-ARC 145-316 aa
PF23559
WHD_DRP 401-472 aa
PF23598
LRR_14 516-736 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771176.1 |
Pfam | PF00931 |
NB-ARC | Domain | 145 | 316 | 3.8e-41 | 141.3 | NB-ARC domain |
XP_057771176.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 401 | 472 | 4e-22 | 78.7 | Disease resistance protein Winged helix domain |
XP_057771176.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 516 | 736 | 3e-13 | 50.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。