当前解析结果
SmilChr06G003202| 统一新 Gene ID | SmilChr06G003202 |
|---|---|
| 名称 | SmilChr06G003202 |
| 描述 | alkane hydroxylase MAH1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 44864869 - 44866353 / - |
| NCBI Gene ID | LOC130991031 |
|---|---|
| GeneID | 130991031 |
| locus_tag | - |
| NCBI Name | LOC130991031 |
| 原始查询 | LOC130991031 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alkane hydroxylase MAH1-like |
| 产物 | alkane hydroxylase MAH1-like |
| Arabidopsis | AT1G57750 (CYP96A15)cytochrome P450, family 96, subfamily A, polypeptide 15 [Source:NCBI gene (formerly Entrezgene);Acc:842150] identity=38.5; qcov=1; evalue=1.58e-125; confidence=medium |
| Rice | Os03g0140100 (MAH1)- identity=34.7; qcov=0.951; evalue=1.57e-107; confidence=low |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991031 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057771216.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057771216.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771216.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771216.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771216.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:44865068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:44865154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B28,B42,B43,C26 |
Chr6:44865276 |
GC |
G |
1bp_deletion | frameshift_variant | 3 | B52,C5,D3 |
Chr6:44865276 |
GC |
G |
1bp_deletion | CDS_variant | 3 | B52,C5,D3 |
Chr6:44865324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B72,C8 |
Chr6:44865631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr6:44865776 |
AC |
A |
1bp_deletion | frameshift_variant | 28 | A10,A13,A24,A6,B103,B130,B137,B139,B33,B41,B53,B55,B57,B67,B71,B79,B80,B91,C12,C23,C42,C44,C48,C51,C62,C74,C80,C82 |
Chr6:44865779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr6:44865973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr6:44866157 |
G |
GTC |
2bp_insertion | frameshift_variant | 4 | A22,C13,C62,D10 |
Chr6:44866157 |
G |
GTC |
2bp_insertion | CDS_variant | 4 | A22,C13,C62,D10 |
Chr6:44866159 |
TCG |
T |
2bp_deletion | frameshift_variant | 4 | A22,C13,C62,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771216.1PF00067
p450 30-482 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771216.1 |
Pfam | PF00067 |
p450 | Domain | 30 | 482 | 7.5e-55 | 187.2 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。