Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003229`

染色体: Chr01 坐标: 51067599-51073938 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003229`
名称	SmilChr01G003229
描述	aminopeptidase M1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51067599 - 51073938 / `+`

ID 对照

NCBI Gene ID	`LOC130991042`
GeneID	`130991042`
locus_tag	`-`
NCBI Name	`LOC130991042`
原始查询	`LOC130991042`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aminopeptidase M1-like
产物	aminopeptidase M1-like
Arabidopsis	`AT4G33090` (APM1) aminopeptidase M1 [Source:NCBI gene (formerly Entrezgene);Acc:829446] identity=58.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0218200` - identity=54.4; qcov=0.988; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding); GO:0042277 (peptide binding); GO:0043171 (peptide catabolic process); GO:0070006 (metalloaminopeptidase activity)
KEGG	-
Pfam	PF01433 (Peptidase_M1); PF11838 (ERAP1_C); PF17900 (Peptidase_M1_N)
InterPro	-
eggNOG	-
NR	GeneID:130991042

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057771224.1`
2	Cytosol	细胞质基质	1.00000	`XP_057771224.1`
3	Nucleus	细胞核	0.00000	`XP_057771224.1`
4	Chromosome	染色体	0.00000	`XP_057771224.1`
5	Centromere	着丝粒	0.00000	`XP_057771224.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51069639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr1:51069709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr1:51069713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:51069765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B140,B2,B66
`Chr1:51069768`	`G`	`GGT`	2bp_insertion	CDS_variant	1	B104
`Chr1:51069889`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B117,B14,B96,C34
`Chr1:51070119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,B106
`Chr1:51071211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B90,B92,C62
`Chr1:51071400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B89,D8
`Chr1:51071544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B105,B16,B75,C35
`Chr1:51071592`	`GA`	`G`	1bp_deletion	frameshift_variant	3	B33,B57,B88
`Chr1:51071592`	`GA`	`G`	1bp_deletion	CDS_variant	3	B33,B57,B88

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771224.1

876 aa

438

876

Peptidase_M1_N

Peptidase_M1

ERAP1_C

PF17900 Peptidase_M1_N 22-205 aa PF01433 Peptidase_M1 240-456 aa PF11838 ERAP1_C 531-850 aa

XP_057771225.1

876 aa

438

876

Peptidase_M1_N

Peptidase_M1

ERAP1_C

PF17900 Peptidase_M1_N 22-205 aa PF01433 Peptidase_M1 240-456 aa PF11838 ERAP1_C 531-850 aa

XP_057771226.1

741 aa

370

741

Peptidase_M1_N

Peptidase_M1

ERAP1_C

PF17900 Peptidase_M1_N 1-70 aa PF01433 Peptidase_M1 105-321 aa PF11838 ERAP1_C 396-715 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771224.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	22	205	4.8e-50	171.0	Peptidase M1 N-terminal domain
`XP_057771224.1`	Pfam	`PF01433`	Peptidase_M1	Domain	240	456	3.2e-81	272.8	Peptidase family M1 domain
`XP_057771224.1`	Pfam	`PF11838`	ERAP1_C	Domain	531	850	8.3e-75	252.8	ERAP1-like C-terminal domain
`XP_057771225.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	22	205	4.8e-50	171.0	Peptidase M1 N-terminal domain
`XP_057771225.1`	Pfam	`PF01433`	Peptidase_M1	Domain	240	456	3.2e-81	272.8	Peptidase family M1 domain
`XP_057771225.1`	Pfam	`PF11838`	ERAP1_C	Domain	531	850	8.3e-75	252.8	ERAP1-like C-terminal domain
`XP_057771226.1`	Pfam	`PF17900`	Peptidase_M1_N	Domain	1	70	1.1e-23	85.1	Peptidase M1 N-terminal domain
`XP_057771226.1`	Pfam	`PF01433`	Peptidase_M1	Domain	105	321	2.4e-81	273.2	Peptidase family M1 domain
`XP_057771226.1`	Pfam	`PF11838`	ERAP1_C	Domain	396	715	4.6e-75	253.7	ERAP1-like C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057915243.1
CAATTCGTCGAACACGTGAAATGCAATGGAGTACACTGTCATCTTGGAGGACAAAACCTTGGCATCTCTCCATTTTAGAGAAACCTGTATATTACAAGTGATGAATAAACATCTTCGCGCAGCTCGTCTTCTGCATCACCTACGAAACATGTTCCATCTGATATAGTGGTGGATAGTGATGATGAGATTCTTGTTTTGGTGTTTGAAGAGTTATTGGAAGTGGGATATGGCTTATTGGAGATTGAGTTTTCAGGGGTGCT...

XM_057915242.1
CGAACACGTGAAATGCAATGGAGTACACTGTCATCTTGGAGGACAAAACCTTGGCATCTCTCCATTTTAGAGAAACCTGTATATTACAAGTGATGAATAAACATCTTCGCGCAGCTCGTCTTCTGCATCACCTACGGCTAAAATTCCATCCAGAAATACAGAAAAGGATCAAAAGAATTGACAGTAGATAGTGCTGAGATGGAAATCCAAGAACAAACAATCGAAAAATTTAAAGGGCAGACAAGACTTCCAGAATTTGC...

CDS

3 records

下载 CDS FASTA

LOC130991042
ATGGAAATCCAAGAACAAACAATCGAAAAATTTAAAGGGCAGACAAGACTTCCAGAATTTGCAGTCCCAAAACGCTATGAGCTTACTTTAAAACTGGATCTCTCTGCTTGCACTTTTTCTGGATGTGTAGCTATTGATACTTCTATTAACAAGCCCACGAAATTTCTGGTCTTGAACGCACTCGAACTCGTCGTTCATCGAGTCTACTTCACCAGCTCTCAGAAACAAAAACATGTTCCATCTGATATAGTGGTGGATAG...

Protein

3 records

下载 Protein FASTA

XP_057771224.1
MEIQEQTIEKFKGQTRLPEFAVPKRYELTLKLDLSACTFSGCVAIDTSINKPTKFLVLNALELVVHRVYFTSSQKQKHVPSDIVVDSDDEILVLVFEELLEVGYGLLEIEFSGVLNEHLKGLYRCTYSDKGEKKNMAATQFEAVDARRCFPCWDEPALKATFKITLENIPSDLTALSNMPVSEEKVHGHLKTVHFEESILMSTYLVAIVVGLFDYIEDTTDDGIKVRSYCPVGKSDKGKFALDIAMKTLSFFKMYFSTPY...

XP_057771225.1
MEIQEQTIEKFKGQTRLPEFAVPKRYELTLKLDLSACTFSGCVAIDTSINKPTKFLVLNALELVVHRVYFTSSQKQKHVPSDIVVDSDDEILVLVFEELLEVGYGLLEIEFSGVLNEHLKGLYRCTYSDKGEKKNMAATQFEAVDARRCFPCWDEPALKATFKITLENIPSDLTALSNMPVSEEKVHGHLKTVHFEESILMSTYLVAIVVGLFDYIEDTTDDGIKVRSYCPVGKSDKGKFALDIAMKTLSFFKMYFSTPY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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