当前解析结果
SmilChr01G003237| 统一新 Gene ID | SmilChr01G003237 |
|---|---|
| 名称 | SmilChr01G003237 |
| 描述 | dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51118984 - 51125378 / - |
| NCBI Gene ID | LOC130991178 |
|---|---|
| GeneID | 130991178 |
| locus_tag | - |
| NCBI Name | LOC130991178 |
| 原始查询 | LOC130991178 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like |
| 产物 | dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex%2C mitochondrial-like |
| Arabidopsis | AT1G54220 (AT1G54220)Dihydrolipoamide acetyltransferase, long form protein [Source:NCBI gene (formerly Entrezgene);Acc:841863] identity=66.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os07g0410100 (P0710F09.103)- identity=64.1; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0004742 (dihydrolipoyllysine-residue acetyltransferase activity); GO:0006086 (pyruvate decarboxylation to acetyl-CoA); GO:0045254 (pyruvate dehydrogenase complex) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00785 (Lipoic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00198 (2-oxoacid_dh); PF00364 (Biotin_lipoyl); PF02817 (E3_binding) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991178 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057771250.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057771250.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771250.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771250.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771250.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51119515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C73 |
Chr1:51119556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr1:51119564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:51119568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,C28,C31 |
Chr1:51119588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B41,C11,C37,C40,C69 |
Chr1:51119688 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,B53,B78 |
Chr1:51119690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr1:51119738 |
C |
CA |
1bp_insertion | frameshift_variant | 10 | A22,B111,B118,B37,B57,B77,C28,C31,C54,D4 |
Chr1:51119877 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr1:51119942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr1:51120098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr1:51120252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,B31,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771250.1PF00364
Biotin_lipoyl 128-200 aa
PF02817
E3_binding 261-296 aa
PF00198
2-oxoacid_dh 321-552 aa
XP_057771259.1PF00364
Biotin_lipoyl 127-199 aa
PF02817
E3_binding 260-295 aa
PF00198
2-oxoacid_dh 320-551 aa
XP_057771262.1PF00364
Biotin_lipoyl 126-198 aa
PF02817
E3_binding 259-294 aa
PF00198
2-oxoacid_dh 319-550 aa
XP_057771272.1PF00364
Biotin_lipoyl 125-197 aa
PF02817
E3_binding 258-293 aa
PF00198
2-oxoacid_dh 318-549 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771250.1 |
Pfam | PF00364 |
Biotin_lipoyl | Domain | 128 | 200 | 2e-18 | 66.7 | Biotin-requiring enzyme |
XP_057771250.1 |
Pfam | PF02817 |
E3_binding | Family | 261 | 296 | 2.6e-17 | 63.5 | e3 binding domain |
XP_057771250.1 |
Pfam | PF00198 |
2-oxoacid_dh | Domain | 321 | 552 | 1.4e-81 | 274.1 | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) |
XP_057771259.1 |
Pfam | PF00364 |
Biotin_lipoyl | Domain | 127 | 199 | 1.7e-18 | 67.0 | Biotin-requiring enzyme |
XP_057771259.1 |
Pfam | PF02817 |
E3_binding | Family | 260 | 295 | 2.6e-17 | 63.5 | e3 binding domain |
XP_057771259.1 |
Pfam | PF00198 |
2-oxoacid_dh | Domain | 320 | 551 | 1.4e-81 | 274.1 | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) |
XP_057771262.1 |
Pfam | PF00364 |
Biotin_lipoyl | Domain | 126 | 198 | 2e-18 | 66.7 | Biotin-requiring enzyme |
XP_057771262.1 |
Pfam | PF02817 |
E3_binding | Family | 259 | 294 | 2.6e-17 | 63.5 | e3 binding domain |
XP_057771262.1 |
Pfam | PF00198 |
2-oxoacid_dh | Domain | 319 | 550 | 1.3e-81 | 274.1 | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) |
XP_057771272.1 |
Pfam | PF00364 |
Biotin_lipoyl | Domain | 125 | 197 | 1.6e-18 | 67.0 | Biotin-requiring enzyme |
XP_057771272.1 |
Pfam | PF02817 |
E3_binding | Family | 258 | 293 | 2.6e-17 | 63.5 | e3 binding domain |
XP_057771272.1 |
Pfam | PF00198 |
2-oxoacid_dh | Domain | 318 | 549 | 1.3e-81 | 274.1 | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。