Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000040`

染色体: Chr07 坐标: 176790-183837 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000040`
名称	SmilChr07G000040
描述	somatic embryogenesis receptor kinase 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	176790 - 183837 / `+`

ID 对照

NCBI Gene ID	`LOC130991226`
GeneID	`130991226`
locus_tag	`-`
NCBI Name	`LOC130991226`
原始查询	`LOC130991226`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	somatic embryogenesis receptor kinase 1-like
产物	somatic embryogenesis receptor kinase 1-like
Arabidopsis	`AT4G33430` (BAK1) BRI1-associated receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:829480] identity=56.4; qcov=0.484; evalue=8.25e-112; confidence=medium
Rice	`Os08g0174700` (BAK1) - identity=55.2; qcov=0.481; evalue=3.57e-108; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130991226

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057771315.1`
2	Cytosol	细胞质基质	0.40000	`XP_057771315.1`
3	Nucleus	细胞核	0.00000	`XP_057771315.1`
4	Chromosome	染色体	0.00000	`XP_057771315.1`
5	Centromere	着丝粒	0.00000	`XP_057771315.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:178257`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,C59
`Chr7:178351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B29,B38,C39
`Chr7:178492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr7:178547`	`AG`	`A`	1bp_deletion	CDS_variant	5	A1,B120,B5,B77,C61
`Chr7:179268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B107
`Chr7:179283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B23,C58
`Chr7:179499`	`TAA`	`T`	2bp_deletion	frameshift_variant	1	C48
`Chr7:179499`	`TAA`	`T`	2bp_deletion	CDS_variant	1	C48
`Chr7:179528`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B14,B28,C77,C85,D3
`Chr7:179546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr7:179554`	`C`	`CAT`	2bp_insertion	frameshift_variant	2	A14,B73
`Chr7:179554`	`C`	`CAT`	2bp_insertion	CDS_variant	2	A14,B73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771315.1

755 aa

378

755

Pkinase

PK_Tyr_Ser-Thr

Pkinase

PF00069 Pkinase 134-396 aa PF07714 PK_Tyr_Ser-Thr 137-398 aa PF07714 PK_Tyr_Ser-Thr 445-711 aa PF00069 Pkinase 455-708 aa

XP_057771316.1

678 aa

339

678

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 134-396 aa PF07714 PK_Tyr_Ser-Thr 137-398 aa PF07714 PK_Tyr_Ser-Thr 445-523 aa PF07714 PK_Tyr_Ser-Thr 526-634 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771315.1`	Pfam	`PF00069`	Pkinase	Domain	134	396	1.3e-54	186.1	Protein kinase domain
`XP_057771315.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	137	398	5e-58	197.1	Protein tyrosine and serine/threonine kinase
`XP_057771315.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	445	711	5e-58	197.1	Protein tyrosine and serine/threonine kinase
`XP_057771315.1`	Pfam	`PF00069`	Pkinase	Domain	455	708	1.3e-54	186.1	Protein kinase domain
`XP_057771316.1`	Pfam	`PF00069`	Pkinase	Domain	134	396	3e-34	119.4	Protein kinase domain
`XP_057771316.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	137	398	5e-42	144.7	Protein tyrosine and serine/threonine kinase
`XP_057771316.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	445	523	5e-42	144.7	Protein tyrosine and serine/threonine kinase
`XP_057771316.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	526	634	5e-42	144.7	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009091108.1
TCTTAAGAGTGTAAAGTGGGTATGAAGCTTATTTTTTTCTCCCGAATTTTGAAAATTTCAGTAGCTGCCTTGTTGTAGTTATCAAAGCAGTGTGCCAGGGACCGGAAGTAACCTCTGCAACTTGAAGTCCCTGCAGAGAGCCCAAGACTCTCTTTGGCATCCACTGACTCGAGATTAGTGTCACGAGCCACGAGCCCAGCACTATGCGTGCCGTTACCCCACATGTAGAGTTCACCATCCACTGTAACAGCACAAGTGTG...

XM_057915332.1
TCTTAAGAGTGTAAAGTGGGTATGAAGCTTATTTTTTTCTCCCGAATTTTGAAAATTTCAGTAGCTGCCTTGTTGTAGTTATCAAAGCAGTGTGCCAGGGACCGGAAGTAACCTCTGCAACTTGAAGTCCCTGCAGAGAGCCCAAGACTCTCTTTGGCATCCACTGACTCGAGATTAGTGTCACGAGCCACGAGCCCAGCACTATGCGTGCCGTTACCCCACATGTAGAGTTCACCATCCACTGTAACAGCACAAGTGTG...

CDS

2 records

下载 CDS FASTA

LOC130991226
ATGATGTCGTCGTCGCGAGATAATTGGGAGAGGCTGGTGGCGGCGGTGTTGAAGAGAGATGAGATACGCCAACTCTGCCACCAAAACTCCATCTCCACCATGTCATCCGATAGTCGGAGAACCTCTAGTTCCAGTGGAGATCTTTCCAGAATTCTGAGCAACATATTGAAGCGGATACCCGTATCACCACCGCGTCAACCGCCGCTTATTAGCGCTTCTGGCCTCGAAGCTAGGAAAAATGCTTCTGGACCTATTACAAG...

Protein

2 records

下载 Protein FASTA

XP_057771315.1
MMSSSRDNWERLVAAVLKRDEIRQLCHQNSISTMSSDSRRTSSSSGDLSRILSNILKRIPVSPPRQPPLISASGLEARKNASGPITRKLFSASLWRRKPKDYNLGRGLVGIPEDHFGLESFSLHELLVATDNFSNNNFLGHGGRGKVYKGRLADGSLVQVTRLRQQKIEITLEITSIAAHCNVLRARGFCFTQKEKLLVYPCMVNKSVAFWLRERHEPLPPLDWPTRKQISLGAAKGLAYLHYECPRKIIHRNVKAANIL...

XP_057771316.1
MMSSSRDNWERLVAAVLKRDEIRQLCHQNSISTMSSDSRRTSSSSGDLSRILSNILKRIPVSPPRQPPLISASGLEARKNASGPITRKLFSASLWRRKPKDYNLGRGLVGIPEDHFGLESFSLHELLVATDNFSNNNFLGHGGRGKVYKGRLADGSLVQVTRLRQQKIEITLEITSIAAHCNVLRARGFCFTQKEKLLVYPCMVNKSVAFWLRERHEPLPPLDWPTRKQISLGAAKGLAYLHYECPRKIIHRNVKAANIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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