Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000044

染色体: Chr07 坐标: 185555-190296 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000044
名称SmilChr07G000044
描述BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向185555 - 190296 / +

ID 对照

NCBI Gene IDLOC130991228
GeneID130991228
locus_tag-
NCBI NameLOC130991228
原始查询LOC130991228

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like
产物BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like
ArabidopsisAT4G33430 (BAK1)
BRI1-associated receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:829480]
identity=54.9; qcov=0.458; evalue=2.34e-107; confidence=medium
RiceOs08g0174700 (BAK1)
-
identity=54.3; qcov=0.455; evalue=1.07e-103; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGGsmil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:130991228

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057771317.1
2 Cytosol 细胞质基质 0.40000 XP_057771317.1
3 Nucleus 细胞核 0.00000 XP_057771317.1
4 Chromosome 染色体 0.00000 XP_057771317.1
5 Centromere 着丝粒 0.00000 XP_057771317.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:186703 C T EMS_canonical_SNV CDS_variant 1 D10
Chr7:186745 G A EMS_canonical_SNV CDS_variant 5 B139,B28,B33,C77,D3
Chr7:186755 C T EMS_canonical_SNV CDS_variant 1 D6
Chr7:186759 C T EMS_canonical_SNV CDS_variant 1 D6
Chr7:186936 T TGA 2bp_insertion frameshift_variant 23 A20,B108,B118,B129,B134,B138,B2,B24,B50,B55,B58,B66,B69,B70,B71,B77,C17,C23,C26,C46,C52,C72,C80
Chr7:187010 CG C 1bp_deletion frameshift_variant 12 B118,B13,B132,B133,B51,C18,C25,C34,C35,C47,C54,C67
Chr7:187012 ACG A 2bp_deletion frameshift_variant 12 B118,B13,B132,B133,B51,C18,C25,C34,C35,C47,C54,C67
Chr7:187048 CA C 1bp_deletion frameshift_variant 3 B117,C46,C65
Chr7:187048 CA C 1bp_deletion CDS_variant 3 B117,C46,C65
Chr7:187056 CTG C 2bp_deletion frameshift_variant 4 B139,C16,C75,C77
Chr7:187056 CTG C 2bp_deletion CDS_variant 4 B139,C16,C75,C77
Chr7:187057 TG T 1bp_deletion frameshift_variant 12 B118,B13,B132,B133,B51,C18,C25,C34,C35,C47,C54,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057771317.1
716 aa
N
1
358
716
Pkinase
PK_Tyr_Ser-Thr
PK_Tyr_Ser-Thr
Pkinase
C
PF00069 Pkinase 136-396 aa PF07714 PK_Tyr_Ser-Thr 137-399 aa PF07714 PK_Tyr_Ser-Thr 452-713 aa PF00069 Pkinase 478-714 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057771317.1 Pfam PF00069 Pkinase Domain 136 396 2e-55 188.8 Protein kinase domain
XP_057771317.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 137 399 4.6e-53 180.9 Protein tyrosine and serine/threonine kinase
XP_057771317.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 452 713 4.6e-53 180.9 Protein tyrosine and serine/threonine kinase
XP_057771317.1 Pfam PF00069 Pkinase Domain 478 714 2e-55 188.8 Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057915334.1
TTTGAACGCGCTTTTCTAACTCTTTTCCACTCAACTAAATTCCGCGAAATTTTAAATGCAAGGGAAAGAGAATAACCATTTCATCAAGCTCTCCCACATATTTTACCTCTCTTTAGCAGAATCCCATGCAATAATTTAGTTGAAAACTGAAGAGAGATGATGTCGTCTTCGCGAGATAATTGGGAGAGGCTGGTGGCGGCGGTGTTGAAGAGAGATGAGATACGCCAACTCTGCCACCAAAACTCCATCTCCACCACGTC...

CDS

1 records

下载 CDS FASTA
LOC130991228
ATGATGTCGTCTTCGCGAGATAATTGGGAGAGGCTGGTGGCGGCGGTGTTGAAGAGAGATGAGATACGCCAACTCTGCCACCAAAACTCCATCTCCACCACGTCATCCGATAGTCCGAGAACCTCTACTTCCAGTGGAGATCTTTCCAGAATTCTGGGCAACATATTGAAGCGTATACCCGTATCACCACCGCATCAACCGCCGCTTATTAGCGCTCCTGGCCTCGAAGCTGGGAAAAATGCTTCTGGACCTATTACAAG...

Protein

1 records

下载 Protein FASTA
XP_057771317.1
MMSSSRDNWERLVAAVLKRDEIRQLCHQNSISTTSSDSPRTSTSSGDLSRILGNILKRIPVSPPHQPPLISAPGLEAGKNASGPITRKLFSASLWRRKPKDYNLGQGLVGIPEDHFGLGSFLLRELLVATDNFSNNNVVGHDRLGKVYKGRLADGSLVQVTRIRRQEIEINLEITSIAAAHCNVLRARGFCFTQKEKLLVYPFMVNKSVEFWLRERNEPLPPLDWPTRRYISLGAAKGLAYLHYSRGIVHHDVKAANIWL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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