当前解析结果
SmilChr07G000044| 统一新 Gene ID | SmilChr07G000044 |
|---|---|
| 名称 | SmilChr07G000044 |
| 描述 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 185555 - 190296 / + |
| NCBI Gene ID | LOC130991228 |
|---|---|
| GeneID | 130991228 |
| locus_tag | - |
| NCBI Name | LOC130991228 |
| 原始查询 | LOC130991228 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like |
| 产物 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like |
| Arabidopsis | AT4G33430 (BAK1)BRI1-associated receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:829480] identity=54.9; qcov=0.458; evalue=2.34e-107; confidence=medium |
| Rice | Os08g0174700 (BAK1)- identity=54.3; qcov=0.455; evalue=1.07e-103; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991228 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057771317.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057771317.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771317.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771317.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771317.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:186703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:186745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B139,B28,B33,C77,D3 |
Chr7:186755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:186759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:186936 |
T |
TGA |
2bp_insertion | frameshift_variant | 23 | A20,B108,B118,B129,B134,B138,B2,B24,B50,B55,B58,B66,B69,B70,B71,B77,C17,C23,C26,C46,C52,C72,C80 |
Chr7:187010 |
CG |
C |
1bp_deletion | frameshift_variant | 12 | B118,B13,B132,B133,B51,C18,C25,C34,C35,C47,C54,C67 |
Chr7:187012 |
ACG |
A |
2bp_deletion | frameshift_variant | 12 | B118,B13,B132,B133,B51,C18,C25,C34,C35,C47,C54,C67 |
Chr7:187048 |
CA |
C |
1bp_deletion | frameshift_variant | 3 | B117,C46,C65 |
Chr7:187048 |
CA |
C |
1bp_deletion | CDS_variant | 3 | B117,C46,C65 |
Chr7:187056 |
CTG |
C |
2bp_deletion | frameshift_variant | 4 | B139,C16,C75,C77 |
Chr7:187056 |
CTG |
C |
2bp_deletion | CDS_variant | 4 | B139,C16,C75,C77 |
Chr7:187057 |
TG |
T |
1bp_deletion | frameshift_variant | 12 | B118,B13,B132,B133,B51,C18,C25,C34,C35,C47,C54,C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771317.1PF00069
Pkinase 136-396 aa
PF07714
PK_Tyr_Ser-Thr 137-399 aa
PF07714
PK_Tyr_Ser-Thr 452-713 aa
PF00069
Pkinase 478-714 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771317.1 |
Pfam | PF00069 |
Pkinase | Domain | 136 | 396 | 2e-55 | 188.8 | Protein kinase domain |
XP_057771317.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 137 | 399 | 4.6e-53 | 180.9 | Protein tyrosine and serine/threonine kinase |
XP_057771317.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 452 | 713 | 4.6e-53 | 180.9 | Protein tyrosine and serine/threonine kinase |
XP_057771317.1 |
Pfam | PF00069 |
Pkinase | Domain | 478 | 714 | 2e-55 | 188.8 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。