Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000038`

染色体: Chr07 坐标: 166816-169766 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000038`
名称	SmilChr07G000038
描述	PH, RCC1 and FYVE domains-containing protein 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	166816 - 169766 / `-`

ID 对照

NCBI Gene ID	`LOC130991229`
GeneID	`130991229`
locus_tag	`-`
NCBI Name	`LOC130991229`
原始查询	`LOC130991229`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	PH, RCC1 and FYVE domains-containing protein 1-like
产物	PH%2C RCC1 and FYVE domains-containing protein 1-like
Arabidopsis	`AT5G42140` (AT5G42140) Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:834219] identity=62; qcov=0.698; evalue=0; confidence=high
Rice	`Os05g0106700` - identity=52.1; qcov=0.801; evalue=0; confidence=high
GO	GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00415 (RCC1); PF01363 (FYVE); PF13540 (RCC1_2); PF25390 (WD40_RLD)
InterPro	-
eggNOG	-
NR	GeneID:130991229

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057771318.1`
2	Cell membrane	细胞膜	0.40000	`XP_057771318.1`
3	Cytoplasm	细胞质	0.20000	`XP_057771318.1`
4	Nucleus	细胞核	0.00000	`XP_057771318.1`
5	Chromosome	染色体	0.00000	`XP_057771318.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:166978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B66,D11
`Chr7:167033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B131,B74,B8,B99,D9
`Chr7:167222`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C24
`Chr7:167222`	`GA`	`G`	1bp_deletion	CDS_variant	1	C24
`Chr7:167225`	`C`	`CT`	1bp_insertion	frameshift_variant	1	C24
`Chr7:167225`	`C`	`CT`	1bp_insertion	CDS_variant	1	C24
`Chr7:167227`	`CAA`	`C`	2bp_deletion	frameshift_variant	1	C24
`Chr7:167227`	`CAA`	`C`	2bp_deletion	CDS_variant	1	C24
`Chr7:167230`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr7:167249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,B52
`Chr7:167567`	`C`	`T`	EMS_canonical_SNV	stop_gained	55	A1,A13,A15,A2,A21,A7,B1,B105,B113,B114,B119,B120,B124,B133,B136,B138,B140,B18,B23,B27,B5,B51,B52,B62,B65,B7,B77,B91,B97,C1,C11,C18,C21,C23,C28,C3,C30,C31,C34,C35,C43,C44,C45,C58,C6,C61,C64,C66,C69,C71,C77,C78,C79,C85,D5
`Chr7:167689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771318.1

668 aa

334

668

WD40_RLD

RCC1_2

RCC1

RCC1_2

RCC1

FYVE

PF25390 WD40_RLD 139-509 aa PF13540 RCC1_2 176-202 aa PF13540 RCC1_2 226-250 aa PF00415 RCC1 295-343 aa PF00415 RCC1 358-404 aa PF00415 RCC1 410-458 aa PF13540 RCC1_2 447-469 aa PF00415 RCC1 463-510 aa PF01363 FYVE 517-580 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771318.1`	Pfam	`PF25390`	WD40_RLD	Repeat	139	509	2.7e-71	241.5	RCC1-like domain
`XP_057771318.1`	Pfam	`PF13540`	RCC1_2	Repeat	176	202	1.6e-33	114.3	Regulator of chromosome condensation (RCC1) repeat
`XP_057771318.1`	Pfam	`PF13540`	RCC1_2	Repeat	226	250	1.6e-33	114.3	Regulator of chromosome condensation (RCC1) repeat
`XP_057771318.1`	Pfam	`PF00415`	RCC1	Repeat	295	343	5.6e-57	190.8	Regulator of chromosome condensation (RCC1) repeat
`XP_057771318.1`	Pfam	`PF00415`	RCC1	Repeat	358	404	5.6e-57	190.8	Regulator of chromosome condensation (RCC1) repeat
`XP_057771318.1`	Pfam	`PF00415`	RCC1	Repeat	410	458	5.6e-57	190.8	Regulator of chromosome condensation (RCC1) repeat
`XP_057771318.1`	Pfam	`PF13540`	RCC1_2	Repeat	447	469	1.6e-33	114.3	Regulator of chromosome condensation (RCC1) repeat
`XP_057771318.1`	Pfam	`PF00415`	RCC1	Repeat	463	510	5.6e-57	190.8	Regulator of chromosome condensation (RCC1) repeat
`XP_057771318.1`	Pfam	`PF01363`	FYVE	Domain	517	580	3.9e-12	46.8	FYVE zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915335.1
CGCTGCGTTTCCTCCTTTTTTCCAGCTGAGCTTTGGCAGCAATATCCAAGAAATTTCAGCGTTTTGCACTTTTAATTCCATGTTAATAAAGATAATGATGTCAAATCTGACAAAAATCTACCGCGGAATAAAGGTGAAAGAGAGATGCCGTTACCGCTGTCGTCGTCTCGGGACAATTGGGAGAGGTTGGTGGCGGCCGTGCTCAAGAGACAGCAGTATTTGCAGCTCTGTAGCCAGTCCTCTAGGAGCCCTAGCATCAG...

CDS

1 records

下载 CDS FASTA

LOC130991229
ATGCCGTTACCGCTGTCGTCGTCTCGGGACAATTGGGAGAGGTTGGTGGCGGCCGTGCTCAAGAGACAGCAGTATTTGCAGCTCTGTAGCCAGTCCTCTAGGAGCCCTAGCATCAGCACCATCGAATCTTCTCGAATCTCTAGCTTCAGTGAAAGAATTCTCAATGACATTCTGGAGCGTGTTTCTGTGGCTAACCCCCGAGTTGGCTATAATGGTGGTGGCAATTCGATATCATCTGGGCAGGACGAACGCTTCAAAAT...

Protein

1 records

下载 Protein FASTA

XP_057771318.1
MPLPLSSSRDNWERLVAAVLKRQQYLQLCSQSSRSPSISTIESSRISSFSERILNDILERVSVANPRVGYNGGGNSISSGQDERFKIDGSSDCNPVTPVQTNFGAKGSASNTLQSKNVPNSTSKCASTRDNFDAALEVVYTWGKAVHDGGIKMRPEEANALLPVPLQCDVVLDAHHIACGVRHAALLTKQGQVFTWGHESSGDAFNAEVTQLRLLESLSSVRVGYVACGEFHTCAVTVDGELYMWGNGTHSAGLVARDTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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