Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000039`

染色体: Chr07 坐标: 169965-173166 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000039`
名称	SmilChr07G000039
描述	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	169965 - 173166 / `+`

ID 对照

NCBI Gene ID	`LOC130991230`
GeneID	`130991230`
locus_tag	`-`
NCBI Name	`LOC130991230`
原始查询	`LOC130991230`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like
产物	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like
Arabidopsis	`AT4G33430` (BAK1) BRI1-associated receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:829480] identity=60.7; qcov=0.768; evalue=9.95e-115; confidence=high
Rice	`Os08g0174700` (BAK1) - identity=59; qcov=0.768; evalue=2.18e-111; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130991230

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057771319.1`
2	Cytosol	细胞质基质	0.20000	`XP_057771319.1`
3	Nucleus	细胞核	0.00000	`XP_057771319.1`
4	Chromosome	染色体	0.00000	`XP_057771319.1`
5	Centromere	着丝粒	0.00000	`XP_057771319.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:171582`	`C`	`CGG`	2bp_insertion	frameshift_variant	30	A1,A14,A19,A8,B100,B103,B129,B130,B136,B18,B26,B31,B32,B49,B58,B6,B60,B62,B70,B71,B95,C12,C24,C4,C42,C46,C63,C67,C71,C77
`Chr7:171585`	`T`	`TA`	1bp_insertion	frameshift_variant	30	A1,A14,A19,A8,B100,B103,B129,B130,B136,B18,B26,B31,B32,B49,B58,B6,B60,B62,B70,B71,B95,C12,C24,C4,C42,C46,C63,C67,C71,C77
`Chr7:171596`	`T`	`TC`	1bp_insertion	frameshift_variant	2	A9,B101
`Chr7:171596`	`T`	`TC`	1bp_insertion	CDS_variant	2	A9,B101
`Chr7:171610`	`ACT`	`A`	2bp_deletion	frameshift_variant	17	A18,A5,A8,A9,B24,B34,B73,C26,C32,C40,C46,C48,C52,C68,C73,C9,D8
`Chr7:171614`	`G`	`GTC`	2bp_insertion	frameshift_variant	19	A18,A5,A6,A8,A9,B24,B34,B66,B73,C26,C32,C40,C41,C46,C48,C52,C68,C9,D8
`Chr7:171723`	`G`	`A`	EMS_canonical_SNV	stop_gained	48	A18,A19,A4,A5,A6,A8,A9,B1,B101,B102,B115,B140,B21,B24,B25,B34,B42,B43,B61,B64,B66,B68,B71,B73,B76,B80,B85,B86,C25,C26,C32,C33,C39,C40,C41,C45,C46,C48,C51,C52,C56,C57,C65,C68,C73,C9,D6,D8
`Chr7:172001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,C34,D2
`Chr7:172015`	`G`	`A`	EMS_canonical_SNV	stop_gained	35	A1,A10,A14,A19,B100,B102,B103,B107,B127,B129,B132,B140,B15,B19,B23,B26,B38,B39,B4,B58,B69,B82,B84,B85,B95,C12,C16,C2,C27,C38,C41,C64,C66,C87,D3
`Chr7:172016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B138,B91,C3,C30
`Chr7:172156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B51,C47,C54,C67
`Chr7:172323`	`T`	`TTC`	2bp_insertion	frameshift_variant	1	B124

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771319.1

402 aa

201

402

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 103-363 aa PF07714 PK_Tyr_Ser-Thr 104-364 aa

XP_057771321.1

397 aa

198

397

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 98-358 aa PF07714 PK_Tyr_Ser-Thr 99-359 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771319.1`	Pfam	`PF00069`	Pkinase	Domain	103	363	5e-37	128.4	Protein kinase domain
`XP_057771319.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	104	364	9.1e-38	130.8	Protein tyrosine and serine/threonine kinase
`XP_057771321.1`	Pfam	`PF00069`	Pkinase	Domain	98	358	4.9e-37	128.5	Protein kinase domain
`XP_057771321.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	99	359	8.6e-38	130.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915338.1
CTTTCTCCTTTGGTAGGGACACGGACACCATGGAATTTTTCTCCACTTCTATTGTTTCCTCTTCATTTTCCTTGTATAGTAAAATCAAAGTGTGCCCCCTCGAAATTTCATGCAATGAAGATGAAGATTTAAGAGAGAGAGAGAAAGCAGCTCTGTTACAAGGAAAATAGGAGCCCGAGCATCTGAGAGATTCGTGCGATTTCAGTGAAGAAATTCTCAATGATATTTTGGATTAAATTTCTGCAGCTACTCTGAATACC...

XM_057915336.1
TCTCCTTTGGTAGGGACACGGACACCATGGAATTTTTCTCCACTTCTATTGTTTCCTCTTCATTTTCCTTGTATAGTAAAATCAAAGTGTGCCCCCTCGAAATTTCATGCAATGAAGATGAAGATTTAAGAGAGAGAGAGAAAGCAGCTCTGTTACAAGGAAAATAGGAGCCCGAGCATCTGAGAGATTCGTGCGATTTCAGTGAAGAAATTCTCAATGATATTTTGGATTAAATTTCTGCAGCTACTCTGAATACCGAA...

CDS

2 records

下载 CDS FASTA

LOC130991230
ATGGCGTGGTGGTCGTCCTCGTCGTCGTCTCGGGACAACTGGGAAAGGCTGGTGGCAGCAGTGCTGAAGAAAGAGCAGATTTGGGATCTGTGTCACCGAAACTCCTTCTCCACCATTGCTTCTGATTATAGCGATGGAATTCTTAGTTTCTCAAATAACAGTTCGAGACCTGTTTCCTCATTCCCATCTCCTCAACTTCCACTTACTAACGACTCTGTCGTTGAAGATATGGAAAATGCTTCTAAAACTATGACACTTAA...

LOC130991230
ATGGCGTGGTGGTCGTCCTCGTCGTCGTCTCGGGACAACTGGGAAAGGCTGGTGGCAGCAGTGCTGAAGAAAGAGCAGATTTGGGATCTGTGTCACCGAAACTCCTTCTCCACCATTGCTTCTGATTATAGCGATGGAATTCTTAGTTCGAGACCTGTTTCCTCATTCCCATCTCCTCAACTTCCACTTACTAACGACTCTGTCGTTGAAGATATGGAAAATGCTTCTAAAACTATGACACTTAAGAGATTTTTCCTAGA...

Protein

2 records

下载 Protein FASTA

XP_057771319.1
MAWWSSSSSSRDNWERLVAAVLKKEQIWDLCHRNSFSTIASDYSDGILSFSNNSSRPVSSFPSPQLPLTNDSVVEDMENASKTMTLKRFFLDQLLVATDDFSHRNVIGHGRHSTVYKGRLVDGSLVAVKKLWQRVIGIELEMASLVKHRNIIKLIGFCITQKEQLLVYPYMANGSVASCLRERYEWQPPLEWPVRKTIALGVAKGLSYLNQECTRGIIHRDVKAANILLDENFEAFVADFTLAKFMDCDDDDDDGVVGTL...

XP_057771321.1
MAWWSSSSSSRDNWERLVAAVLKKEQIWDLCHRNSFSTIASDYSDGILSSRPVSSFPSPQLPLTNDSVVEDMENASKTMTLKRFFLDQLLVATDDFSHRNVIGHGRHSTVYKGRLVDGSLVAVKKLWQRVIGIELEMASLVKHRNIIKLIGFCITQKEQLLVYPYMANGSVASCLRERYEWQPPLEWPVRKTIALGVAKGLSYLNQECTRGIIHRDVKAANILLDENFEAFVADFTLAKFMDCDDDDDDGVVGTLSHIAP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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