Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003241`

染色体: Chr01 坐标: 51144429-51148025 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003241`
名称	SmilChr01G003241
描述	uncharacterized SmilChr01G003241
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51144429 - 51148025 / `-`

ID 对照

NCBI Gene ID	`LOC130991236`
GeneID	`130991236`
locus_tag	`-`
NCBI Name	`LOC130991236`
原始查询	`LOC130991236`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	B1114B07.27-1; symbol=B1114B07.27-1; hit=Os01g0570500; species=rice; confidence=high
产物	B1114B07.27-1; symbol=B1114B07.27-1; hit=Os01g0570500; species=rice; confidence=high
Arabidopsis	`AT1G72710` (CKL2) casein kinase 1-like protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:843603] identity=70; qcov=0.92; evalue=0; confidence=high
Rice	`Os01g0570500` (B1114B07.27-1) - identity=69.5; qcov=0.937; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006897 (endocytosis); GO:0007165 (signal transduction); GO:0018105 (peptidyl-serine phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal)
InterPro	-
eggNOG	-
NR	GeneID:130991236

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057771332.1`
2	Cytosol	细胞质基质	0.80000	`XP_057771332.1`
3	Nucleus	细胞核	0.40000	`XP_057771332.1`
4	Chromosome	染色体	0.00000	`XP_057771332.1`
5	Centromere	着丝粒	0.00000	`XP_057771332.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51144662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr1:51144900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B56,B96,C23
`Chr1:51144924`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:51145039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:51145114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,B84
`Chr1:51145377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:51145793`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr1:51145979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B128,B89,D8
`Chr1:51146488`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B56,B96,C23
`Chr1:51146490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr1:51146996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B121,B3,B93,C77
`Chr1:51147704`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771332.1

511 aa

256

511

Pkinase

PK_Tyr_Ser-Thr

Pkinase_fungal

PF00069 Pkinase 9-227 aa PF07714 PK_Tyr_Ser-Thr 11-233 aa PF17667 Pkinase_fungal 108-206 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771332.1`	Pfam	`PF00069`	Pkinase	Domain	9	227	4.2e-27	95.9	Protein kinase domain
`XP_057771332.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	11	233	2.8e-15	57.0	Protein tyrosine and serine/threonine kinase
`XP_057771332.1`	Pfam	`PF17667`	Pkinase_fungal	Domain	108	206	6.7e-08	32.4	Fungal protein kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915349.1
GAAACAGTAGAAAACAAAAAGCAGAAAAAAGAAAAAGAAAAAAGAAAAAAGAGAAGAAACAGATAAATCATTGGAACTTAGGTGTGAACGGAACAAAAAAAATTCTCCGAATTTCTTGATCAGATCGACGAAACGAGGAGCCCAAACATGGATTAAAGTTGTTAATTTTTGTCCCGGATAGGAATTGTCGCGCTTTCTCTATCTAGGAATTTGCAGGATTTGATTGAGTTCGGGGGAAAAGAGGGAGTGGATTGGGTTCG...

CDS

1 records

下载 CDS FASTA

LOC130991236
ATGGAGCCCCGAGTTGGGAATAAGTATCGCCTCGGCAGGAAAATCGGGAGCGGCTCCTTTGGGGAGATCTATTTAGGAACTAATATACAGACGAATGAAGAAGTAGCTATTAAGCTTGAAAATGTGAAGACGAAGCATCCCCAATTACAATACGAGTCGAAATTGTACAAATTGCTTCAAGGAGGAACTGGGATTCCGAGTGTTAAATGGTTTGGAGTTGAAGGAGACTATAATGTGCTTGTGATTGAATTGTTGGGGCA...

Protein

1 records

下载 Protein FASTA

XP_057771332.1
MEPRVGNKYRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLQYESKLYKLLQGGTGIPSVKWFGVEGDYNVLVIELLGHSLEDLFNFCSRKLSLKTVLMLADQMITRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKVSTSIESLCRGYPTEFASYFHYCRSLKF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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