当前解析结果
SmilChr07G000060| 统一新 Gene ID | SmilChr07G000060 |
|---|---|
| 名称 | SmilChr07G000060 |
| 描述 | WAT1-related protein At4g08300-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 270185 - 275535 / - |
| NCBI Gene ID | LOC130991240 |
|---|---|
| GeneID | 130991240 |
| locus_tag | - |
| NCBI Name | LOC130991240 |
| 原始查询 | LOC130991240 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WAT1-related protein At4g08300-like |
| 产物 | WAT1-related protein At4g08300-like |
| Arabidopsis | AT4G08300 (UMAMIT17)nodulin MtN21 /EamA-like transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:826384] identity=41.4; qcov=0.916; evalue=1.13e-86; confidence=medium |
| Rice | Os03g0149300- identity=57.6; qcov=0.941; evalue=2.75e-143; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0022857 (transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF00892 (EamA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991240 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057771333.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057771333.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057771333.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771333.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771333.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:270305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:270560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr7:270577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr7:270601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,D3 |
Chr7:270637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,D4 |
Chr7:270655 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B76,C23,C36,C57 |
Chr7:270885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C38,C6 |
Chr7:271205 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C48,C55,C87 |
Chr7:271376 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:271564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B134,B76,C23,C74,D3 |
Chr7:271667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr7:271682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B26,B38,B39,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771333.1PF00892
EamA 16-154 aa
PF00892
EamA 186-324 aa
XP_057771334.1PF00892
EamA 16-154 aa
PF00892
EamA 186-324 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771333.1 |
Pfam | PF00892 |
EamA | Domain | 16 | 154 | 1.4e-23 | 84.4 | EamA-like transporter family |
XP_057771333.1 |
Pfam | PF00892 |
EamA | Domain | 186 | 324 | 1.4e-23 | 84.4 | EamA-like transporter family |
XP_057771334.1 |
Pfam | PF00892 |
EamA | Domain | 16 | 154 | 1.4e-23 | 84.4 | EamA-like transporter family |
XP_057771334.1 |
Pfam | PF00892 |
EamA | Domain | 186 | 324 | 1.4e-23 | 84.4 | EamA-like transporter family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。