当前解析结果
SmilChr07G000066| 统一新 Gene ID | SmilChr07G000066 |
|---|---|
| 名称 | SmilChr07G000066 |
| 描述 | deacetoxyvindoline 4-hydroxylase-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 305730 - 308737 / - |
| NCBI Gene ID | LOC130991255 |
|---|---|
| GeneID | 130991255 |
| locus_tag | - |
| NCBI Name | LOC130991255 |
| 原始查询 | LOC130991255 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | deacetoxyvindoline 4-hydroxylase-like |
| 产物 | deacetoxyvindoline 4-hydroxylase-like |
| Arabidopsis | AT5G59530 (AT5G59530)2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836072] identity=49.2; qcov=0.965; evalue=2.5e-118; confidence=high |
| Rice | Os03g0690500- identity=45.6; qcov=0.976; evalue=1.39e-103; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991255 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771348.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057771348.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771348.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771348.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771348.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:306046 |
AC |
A |
1bp_deletion | frameshift_variant | 72 | A10,A13,A15,A19,A20,A23,A24,A6,A9,B1,B10,B106,B108,B11,B111,B120,B129,B131,B137,B14,B18,B22,B28,B38,B39,B40,B5,B53,B55,B59,B6,B75,B77,B79,B87,B89,B9,C11,C16,C17,C19,C20,C21,C23,C25,C28,C29,C3,C34,C35,C36,C40,C43,C46,C47,C48,C51,C53,C54,C55,C59,C6,C60,C61,C63,C67,C69,C80,C86,C9,D4,D5 |
Chr7:306050 |
G |
GA |
1bp_insertion | frameshift_variant | 71 | A10,A13,A15,A19,A20,A23,A24,A6,A9,B1,B10,B106,B108,B11,B111,B120,B129,B131,B137,B14,B18,B22,B28,B38,B40,B5,B53,B55,B59,B6,B75,B77,B79,B87,B89,B9,C11,C16,C17,C19,C20,C21,C23,C25,C28,C29,C3,C34,C35,C36,C40,C43,C46,C47,C48,C51,C53,C54,C55,C59,C6,C60,C61,C63,C67,C69,C80,C86,C9,D4,D5 |
Chr7:306565 |
C |
CCG |
2bp_insertion | frameshift_variant | 1 | B44 |
Chr7:306565 |
C |
CCG |
2bp_insertion | CDS_variant | 1 | B44 |
Chr7:306628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B14,B79 |
Chr7:306647 |
A |
ATG |
2bp_insertion | frameshift_variant | 105 | A10,A13,A15,A18,A19,A22,A23,A24,A25,A4,A6,A8,A9,B10,B101,B103,B106,B108,B109,B11,B111,B113,B117,B118,B12,B124,B129,B138,B14,B16,B21,B25,B26,B27,B30,B36,B37,B38,B40,B41,B42,B43,B48,B50,B51,B53,B54,B55,B56,B60,B65,B70,B75,B77,B78,B79,B8,B84,B86,B87,B89,B9,B91,B93,B94,B96,C11,C12,C16,C17,C19,C23,C24,C25,C28,C29,C3,C31,C35,C36,C39,C40,C45,C48,C49,C5,C50,C51,C52,C53,C59,C60,C63,C69,C70,C73,C75,C8,C80,C81,C9,D11,D2,D4,D6 |
Chr7:306648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,B88,C16,C63 |
Chr7:306649 |
GGA |
G |
2bp_deletion | frameshift_variant | 105 | A10,A13,A15,A18,A19,A22,A23,A24,A25,A4,A6,A8,A9,B10,B101,B103,B106,B108,B109,B11,B111,B113,B117,B118,B12,B124,B129,B138,B14,B16,B21,B25,B26,B27,B30,B36,B37,B38,B40,B41,B42,B43,B48,B50,B51,B53,B54,B55,B56,B60,B65,B70,B75,B77,B78,B79,B8,B84,B86,B87,B89,B9,B91,B93,B94,B96,C11,C12,C16,C17,C19,C23,C24,C25,C28,C29,C3,C31,C35,C36,C39,C40,C45,C48,C49,C5,C50,C51,C52,C53,C59,C60,C63,C69,C70,C73,C75,C8,C80,C81,C9,D11,D2,D4,D6 |
Chr7:306711 |
TCG |
T |
2bp_deletion | frameshift_variant | 118 | A11,A14,A16,A2,A21,A23,A5,B10,B104,B106,B110,B111,B112,B114,B115,B120,B121,B125,B126,B13,B131,B132,B134,B136,B140,B15,B17,B2,B20,B23,B26,B3,B31,B32,B33,B34,B35,B38,B4,B41,B44,B48,B49,B5,B50,B51,B52,B56,B57,B59,B6,B63,B64,B65,B67,B68,B69,B70,B73,B76,B79,B8,B80,B81,B82,B83,B85,B89,B90,B94,B96,B98,B99,C1,C10,C20,C21,C22,C26,C27,C32,C34,C39,C4,C43,C47,C51,C56,C57,C58,C60,C61,C62,C64,C65,C66,C67,C68,C7,C70,C71,C72,C73,C74,C76,C78,C8,C83,C85,C86,D1,D11,D3,D4,D5,D6,D7,D8 |
Chr7:308487 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,B88,C16,C63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771348.1PF14226
DIOX_N 55-153 aa
PF03171
2OG-FeII_Oxy 212-303 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771348.1 |
Pfam | PF14226 |
DIOX_N | Family | 55 | 153 | 1.8e-18 | 68.0 | non-haem dioxygenase in morphine synthesis N-terminal |
XP_057771348.1 |
Pfam | PF03171 |
2OG-FeII_Oxy | Domain | 212 | 303 | 5.3e-30 | 104.4 | 2OG-Fe(II) oxygenase superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。