当前解析结果
SmilChr07G000089| 统一新 Gene ID | SmilChr07G000089 |
|---|---|
| 名称 | SmilChr07G000089 |
| 描述 | uncharacterized SmilChr07G000089 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 476045 - 481828 / + |
| NCBI Gene ID | LOC130991285 |
|---|---|
| GeneID | 130991285 |
| locus_tag | - |
| NCBI Name | LOC130991285 |
| 原始查询 | LOC130991285 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CwfJ-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:842082]; symbol=AT1G56290; hit=AT1G56290; species=arabidopsis; confidence=high |
| 产物 | CwfJ-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:842082]; symbol=AT1G56290; hit=AT1G56290; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G56290 (AT1G56290)CwfJ-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:842082] identity=56.9; qcov=0.789; evalue=0; confidence=high |
| Rice | Os03g0740700- identity=52.3; qcov=0.79; evalue=0; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0071014 (post-mRNA release spliceosomal complex) |
| KEGG | - |
| Pfam | PF04676 (CwfJ_C_2); PF04677 (CwfJ_C_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991285 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771385.1 |
| 2 | Nucleoplasm | 核质 | 0.40000 | XP_057771385.1 |
| 3 | Nuclear speckle | 核斑点 | 0.20000 | XP_057771385.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771385.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771385.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:477239 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:477296 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr7:477328 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C78,C9 |
Chr7:477426 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr7:477475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr7:477692 |
AC |
A |
1bp_deletion | frameshift_variant | 42 | A11,A22,A5,B103,B104,B108,B112,B120,B125,B130,B135,B137,B18,B25,B29,B38,B39,B45,B6,B64,B69,B71,B77,B87,B91,B93,B97,C35,C38,C42,C43,C48,C51,C54,C63,C67,C71,C77,C83,D11,D5,D8 |
Chr7:477694 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 43 | A11,A18,A22,A5,B103,B104,B108,B112,B120,B125,B130,B135,B137,B18,B25,B29,B38,B39,B45,B6,B64,B69,B71,B77,B87,B91,B93,B97,C35,C38,C42,C43,C48,C51,C54,C63,C67,C71,C77,C83,D11,D5,D8 |
Chr7:479012 |
G |
GA |
1bp_insertion | frameshift_variant | 9 | B1,B102,B26,B72,B76,B79,B99,C56,C68 |
Chr7:479038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr7:479429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,C55,C87 |
Chr7:479513 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:479637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B68,C11,C28,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771385.1PF04677
CwfJ_C_1 563-686 aa
PF04676
CwfJ_C_2 695-792 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771385.1 |
Pfam | PF04677 |
CwfJ_C_1 | Domain | 563 | 686 | 1.6e-43 | 148.2 | Protein similar to CwfJ C-terminal |
XP_057771385.1 |
Pfam | PF04676 |
CwfJ_C_2 | Family | 695 | 792 | 1.5e-30 | 106.6 | Protein similar to CwfJ C-terminus 2 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。