Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000102

染色体: Chr07 坐标: 548125-549914 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000102
名称SmilChr07G000102
描述DNA-directed RNA polymerase V subunit 7-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向548125 - 549914 / +

ID 对照

NCBI Gene IDLOC130991297
GeneID130991297
locus_tag-
NCBI NameLOC130991297
原始查询LOC130991297

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog
描述DNA-directed RNA polymerase V subunit 7-like
产物DNA-directed RNA polymerase V subunit 7-like
ArabidopsisAT4G14660 (NRPE7)
RNA polymerase Rpb7-like, N-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:827116]
identity=61.9; qcov=0.978; evalue=1.33e-83; confidence=high
RiceOs05g0157100
-
identity=50.3; qcov=0.972; evalue=1.83e-59; confidence=high
GOGO:0003697 (single-stranded DNA binding); GO:0003727 (single-stranded RNA binding); GO:0006352 (DNA-templated transcription initiation)
KEGGsmil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage))
Pfam-
InterPro-
eggNOG-
NRGeneID:130991297

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057771409.1
2 Cytosol 细胞质基质 1.00000 XP_057771409.1
3 Nucleus 细胞核 0.80000 XP_057771409.1
4 Chromosome 染色体 0.00000 XP_057771409.1
5 Centromere 着丝粒 0.00000 XP_057771409.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:549496 G A EMS_canonical_SNV CDS_variant 1 B99
Chr7:549517 G A EMS_canonical_SNV CDS_variant 1 B99
Chr7:549553 C T EMS_canonical_SNV CDS_variant 2 B130,B135
Chr7:549619 C T EMS_canonical_SNV CDS_variant 3 B12,B26,C12
Chr7:549640 C T EMS_canonical_SNV CDS_variant 1 D10
Chr7:549643 G A EMS_canonical_SNV CDS_variant 2 B118,B26
Chr7:549667 G A EMS_canonical_SNV CDS_variant 2 B93,D7
Chr7:549694 G A EMS_canonical_SNV CDS_variant 2 B118,B26
Chr7:549700 G A EMS_canonical_SNV CDS_variant 5 B58,B62,B74,B88,C61
Chr7:549718 C T EMS_canonical_SNV CDS_variant 1 B99
Chr7:549773 G A EMS_canonical_SNV CDS_variant 5 B110,B121,B98,C74,D7
Chr7:549798 AG A 1bp_deletion CDS_variant 2 C43,D6

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057915426.1
AGTTTGATTAAAAGAGGGGTTAGCGAAAATTGAAATTCAACTATTTTGGGGGGTCGAAGTGCAAATACCTCGATTATTTTGTGGGTAAATAACAGAATATCCTAAATCTCAAAGGAGCTTCAAGGAAAAAGAAGGAAACATAAAAGCTCACTGATTGTTTGAACTCCAAATAAGGGTGAAGGTTTACAGAGAAGGTGAAAATCTGCTTCGCAAGAAATTGATTGTTGCATTCTTCTACTGAAAATCTACATTCTCGCATC...
XM_057915427.1
AAGGAAAAAGAAGGAAACATAAAAGCTCACTGATTGTTTGAACTCCAAATAAGGGTGAAGGTTTACAGAGAAGGTGAAAATCTGCTTCGCAAGAAATTGATTGTTGCATTCTTCTACTGAAAATCTACATTCTCGCATCGCCTCAGCGCCTCCGCGCGTCGAGGCGGCCGCCTTTCGCCGCCGGGGCGCACTTTGTGCTTTGAGGGGAGAAAATGTTTCTTAAAACGCAGTTGTCTTGGAATGTATTGATTCCTGCTGAG...

CDS

2 records

下载 CDS FASTA
LOC130991297
ATGTTTCTTAAAACGCAGTTGTCTTGGAATGTATTGATTCCTGCTGAGAACCTCGATGCTGAAGGGCTGATGCTTCAGAGGGCCATATTGACTCGCCTCCTTGATGACTTCGCGATGAAGAAGGCTTTCAAAGACATAGGTTACTTCATTGCCGTAACCACTCTGGACCGCGTTGGGGAGGGTTTAGTCCGGCAACAGTCCGGGGATCTCCTATTCCCGGTGGACTTCAGTTGCATAACGTTCAAGATGCTCCCGGGCGA...
LOC130991297
ATGTTTCTTAAAACGCAGTTGTCTTGGAATGTATTGATTCCTGCTGAGAACCTCGATGCTGAAGGGCTGATGCTTCAGAGGGCCATATTGACTCGCCTCCTTGATGACTTCGCGATGAAGAAGGCTTTCAAAGACATAGGTTACTTCATTGCCGTAACCACTCTGGACCGCGTTGGGGAGGGTTTAGTCCGGCAACAGTCCGGGGATCTCCTATTCCCGGTGGACTTCAGTTGCATAACGTTCAAGATGCTCCCGGGCGA...

Protein

2 records

下载 Protein FASTA
XP_057771409.1
MFLKTQLSWNVLIPAENLDAEGLMLQRAILTRLLDDFAMKKAFKDIGYFIAVTTLDRVGEGLVRQQSGDLLFPVDFSCITFKMLPGETLEGVVHKILKHGIFLRCGPAEKVYISHHKMAGYEYVPGENPCFMNEKLSKIENGSLVRVTVLAERYDEAEKDFRALVSLEGDYLGPVSSSPV
XP_057771410.1
MFLKTQLSWNVLIPAENLDAEGLMLQRAILTRLLDDFAMKKAFKDIGYFIAVTTLDRVGEGLVRQQSGDLLFPVDFSCITFKMLPGETLEGVVHKILKHGIFLRCGPAEKVYISHHKMAGYEYVPGENPCFMNEKLSKIENGSLVRVTVLAERYDEAEKDFRALVSLEGDYLGPVSSSPV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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