当前解析结果
SmilChr07G000111| 统一新 Gene ID | SmilChr07G000111 |
|---|---|
| 名称 | SmilChr07G000111 |
| 描述 | mRNA export factor GLE1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 617163 - 621742 / + |
| NCBI Gene ID | LOC130991307 |
|---|---|
| GeneID | 130991307 |
| locus_tag | - |
| NCBI Name | LOC130991307 |
| 原始查询 | LOC130991307 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mRNA export factor GLE1-like |
| 产物 | mRNA export factor GLE1-like |
| Arabidopsis | AT1G13120 (GLE1)nucleoporin GLE1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:837869] identity=39.2; qcov=0.985; evalue=2.13e-105; confidence=medium |
| Rice | Os02g0596100- identity=35; qcov=0.994; evalue=7.75e-93; confidence=low |
| GO | GO:0000822 (inositol hexakisphosphate binding); GO:0005543 (phospholipid binding); GO:0005643 (nuclear pore); GO:0005737 (cytoplasm); GO:0006446 (regulation of translational initiation); GO:0006449 (regulation of translational termination); GO:0016973 (poly(A)+ mRNA export from nucleus); GO:0031369 (translation initiation factor binding); GO:0044614 (nuclear pore cytoplasmic filaments) |
| KEGG | smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)); smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF07817 (GLE1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991307 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771421.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057771421.1 |
| 3 | Cytoskeleton | 细胞骨架 | 0.40000 | XP_057771421.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771421.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771421.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:617797 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | B83,C20 |
Chr7:617797 |
A |
AC |
1bp_insertion | CDS_variant | 2 | B83,C20 |
Chr7:617824 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B83,C20 |
Chr7:617824 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B83,C20 |
Chr7:617830 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B83,C20 |
Chr7:617830 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B83,C20 |
Chr7:617861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C20,D10 |
Chr7:618032 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B35,B84 |
Chr7:618059 |
AGC |
A |
2bp_deletion | frameshift_variant | 6 | A24,B28,B73,C61,C85,D6 |
Chr7:618064 |
A |
ATT |
2bp_insertion | frameshift_variant | 6 | A24,B28,B73,C61,C85,D6 |
Chr7:618073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B84 |
Chr7:619754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771421.1PF07817
GLE1 244-474 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771421.1 |
Pfam | PF07817 |
GLE1 | Repeat | 244 | 474 | 1.2e-38 | 133.6 | GLE1-like protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。