当前解析结果
SmilChr07G000120| 统一新 Gene ID | SmilChr07G000120 |
|---|---|
| 名称 | SmilChr07G000120 |
| 描述 | 3-ketoacyl-CoA synthase 11-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 684232 - 687444 / - |
| NCBI Gene ID | LOC130991313 |
|---|---|
| GeneID | 130991313 |
| locus_tag | - |
| NCBI Name | LOC130991313 |
| 原始查询 | LOC130991313 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-ketoacyl-CoA synthase 11-like |
| 产物 | 3-ketoacyl-CoA synthase 11-like |
| Arabidopsis | AT2G26640 (KCS11)3-ketoacyl-CoA synthase 11 [Source:NCBI gene (formerly Entrezgene);Acc:817205] identity=65.1; qcov=0.97; evalue=0; confidence=high |
| Rice | Os02g0205500- identity=63.7; qcov=1; evalue=0; confidence=high |
| GO | GO:0006633 (fatty acid biosynthetic process); GO:0016020 (membrane); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups) |
| KEGG | smil00062 (Fatty acid elongation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02797 (Chal_sti_synt_C); PF08392 (FAE1_CUT1_RppA); PF08541 (ACP_syn_III_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991313 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057771427.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057771427.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771427.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771427.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771427.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:684522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr7:684750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C50,C51 |
Chr7:684899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,B64 |
Chr7:685080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B84,C28,D2 |
Chr7:686604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B37,C48 |
Chr7:686694 |
G |
GT |
1bp_insertion | frameshift_variant | 3 | B69,B90,C69 |
Chr7:686694 |
G |
GT |
1bp_insertion | CDS_variant | 3 | B69,B90,C69 |
Chr7:686913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B54,C6,C87,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771427.1PF08392
FAE1_CUT1_RppA 85-372 aa
PF08541
ACP_syn_III_C 389-469 aa
PF02797
Chal_sti_synt_C 391-463 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771427.1 |
Pfam | PF08392 |
FAE1_CUT1_RppA | Family | 85 | 372 | 7.3e-120 | 400.4 | FAE1/Type III polyketide synthase-like protein |
XP_057771427.1 |
Pfam | PF08541 |
ACP_syn_III_C | Domain | 389 | 469 | 1.3e-11 | 45.2 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
XP_057771427.1 |
Pfam | PF02797 |
Chal_sti_synt_C | Domain | 391 | 463 | 4.1e-09 | 37.3 | Chalcone and stilbene synthases, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。