Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000128`

染色体: Chr07 坐标: 748014-751057 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000128`
名称	SmilChr07G000128
描述	serine/threonine receptor-like kinase NFP
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	748014 - 751057 / `+`

ID 对照

NCBI Gene ID	`LOC130991322`
GeneID	`130991322`
locus_tag	`-`
NCBI Name	`LOC130991322`
原始查询	`LOC130991322`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine receptor-like kinase NFP
产物	serine/threonine receptor-like kinase NFP
Arabidopsis	`AT2G23770` (LYK4) protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816909] identity=35.3; qcov=0.971; evalue=2.16e-92; confidence=medium
Rice	`Os02g0681700` (OsRLCK83) - identity=64.3; qcov=0.393; evalue=4.6e-106; confidence=low
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF01476 (LysM); PF07714 (PK_Tyr_Ser-Thr); PF23446 (LysM1_NFP_LYK); PF23457 (LysM2_NFP); PF23462 (LysM3_NFP)
InterPro	-
eggNOG	-
NR	GeneID:130991322

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057771439.1`
2	Nucleus	细胞核	0.00000	`XP_057771439.1`
3	Chromosome	染色体	0.00000	`XP_057771439.1`
4	Centromere	着丝粒	0.00000	`XP_057771439.1`
5	Chromatin	染色质	0.00000	`XP_057771439.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:748290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr7:748324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr7:748325`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B58
`Chr7:748325`	`TA`	`T`	1bp_deletion	CDS_variant	1	B58
`Chr7:748349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr7:748350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B118,B137,B139,C80
`Chr7:748393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C64,C66,C84,D7
`Chr7:748416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C64,C66,C84,D7
`Chr7:748425`	`G`	`GT`	1bp_insertion	stop_gained,frameshift_variant	1	D5
`Chr7:748425`	`G`	`GT`	1bp_insertion	CDS_variant	1	D5
`Chr7:748452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr7:748485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C64,C66,C82,C84,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771439.1

613 aa

306

613

LysM1_NFP_LYK

LysM2_NFP

LysM

LysM3_NFP

LysM

Pkinase

PK_Tyr_Ser-Thr

PF23446 LysM1_NFP_LYK 47-104 aa PF23457 LysM2_NFP 114-168 aa PF01476 LysM 121-166 aa PF23462 LysM3_NFP 183-218 aa PF01476 LysM 187-218 aa PF00069 Pkinase 338-586 aa PF07714 PK_Tyr_Ser-Thr 356-588 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771439.1`	Pfam	`PF23446`	LysM1_NFP_LYK	Domain	47	104	2e-21	77.3	NFP/LYK LysM1 domain
`XP_057771439.1`	Pfam	`PF23457`	LysM2_NFP	Domain	114	168	2.1e-20	73.2	NFP LysM2 domain
`XP_057771439.1`	Pfam	`PF01476`	LysM	Domain	121	166	2.7e-07	31.1	LysM domain
`XP_057771439.1`	Pfam	`PF23462`	LysM3_NFP	Domain	183	218	1.8e-07	32.3	NFP LysM3 domain
`XP_057771439.1`	Pfam	`PF01476`	LysM	Domain	187	218	2.7e-07	31.1	LysM domain
`XP_057771439.1`	Pfam	`PF00069`	Pkinase	Domain	338	586	7.1e-41	141.0	Protein kinase domain
`XP_057771439.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	356	588	7.3e-39	134.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915456.1
TTTATTTTTTATTTTTTATTTTGAAACAATGGTATTATATACATTTAAAATATTATGGTATTTTTTTTTTTTTTGAAACAATGGTATTATACACATTTAAAATATTATGGTATGTATAAATACCTAAATAACCAACTATGCTTCTTGAGTCCTTGACTTCAATCTTGCCATAAACCACAAAAATAAAAATCTTCATCACTTCCATTTCTTCATCAAAAAAAAAAAAAAAACTGTAAAAATGAAAATCAAATCCCACCATC...

CDS

1 records

下载 CDS FASTA

LOC130991322
ATGAAAATCAAATCCCACCATCTCCCTCCACTGATCCTCCTCCTCCTATGGTACAACACCAATCAGCACAACGTACAAGCCCAGCAGCTCCCCTCCACCATCGGCTACAACTGCACCGCCAACCAATCCTCCACCCCCTGCGACACCTACGTCTTCTACAGAGCCGCCGCGCCGGACTTCCTCGACCTCGCCGCCGTCGGCGATCTCTTCTCCGTCAGCCGCCCCGCCATCTCGCGGCCGAGCAACATCTCCTCCCCCGC...

Protein

1 records

下载 Protein FASTA

XP_057771439.1
MKIKSHHLPPLILLLLWYNTNQHNVQAQQLPSTIGYNCTANQSSTPCDTYVFYRAAAPDFLDLAAVGDLFSVSRPAISRPSNISSPASRLLPDQTLFVPIKCSCNNVNTSVTISYAPQNFTIRSGDTFYLVSTISYQNLTTFQSVEVVNPNFTPTRLEVGDVIVFPIFCKCPTPSQLRSGVNYLISYVFQPSDSLAAVASRLGASEQSITEVNGGEINPFDTIFVPVSNLPNLTQPVVPPLSPPARERKGAVIGLGIGLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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