当前解析结果
SmilChr07G000173| 统一新 Gene ID | SmilChr07G000173 |
|---|---|
| 名称 | SmilChr07G000173 |
| 描述 | ATP sulfurylase 1, chloroplastic-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1080009 - 1084443 / - |
| NCBI Gene ID | LOC130991365 |
|---|---|
| GeneID | 130991365 |
| locus_tag | - |
| NCBI Name | LOC130991365 |
| 原始查询 | LOC130991365 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP sulfurylase 1, chloroplastic-like |
| 产物 | ATP sulfurylase 1%2C chloroplastic-like |
| Arabidopsis | AT3G22890 (APS1)ATP sulfurylase 1 [Source:NCBI gene (formerly Entrezgene);Acc:821861] identity=77.2; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0743900 (OsATPS)- identity=75.8; qcov=0.921; evalue=0; confidence=high |
| GO | GO:0000103 (sulfate assimilation); GO:0004020 (adenylylsulfate kinase activity); GO:0004781 (sulfate adenylyltransferase (ATP) activity) |
| KEGG | smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00261 (Monobactam biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00450 (Selenocompound metabolism - Salvia miltiorrhiza (redroot sage)); smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01320 (Sulfur cycle - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01747 (ATP-sulfurylase); PF14306 (PUA_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991365 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057771519.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057771519.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771519.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771519.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771519.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1080224 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr7:1080245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr7:1080248 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:1080311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B134,B55,C63 |
Chr7:1080314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,C53,C84 |
Chr7:1080555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B46,B68,B7,B79 |
Chr7:1080580 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,B53 |
Chr7:1080940 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,C49 |
Chr7:1080994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B15,D3 |
Chr7:1081039 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B15,D3 |
Chr7:1081053 |
AG |
A |
1bp_deletion | frameshift_variant | 15 | A5,B105,B111,B126,B127,B31,B47,B59,B64,C19,C37,C4,C7,C73,D9 |
Chr7:1081067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B112,B73,C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771519.1PF14306
PUA_2 44-206 aa
PF01747
ATP-sulfurylase 216-438 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771519.1 |
Pfam | PF14306 |
PUA_2 | Domain | 44 | 206 | 4.1e-44 | 150.7 | PUA-like domain |
XP_057771519.1 |
Pfam | PF01747 |
ATP-sulfurylase | Domain | 216 | 438 | 2.2e-66 | 224.0 | ATP-sulfurylase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。