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调控/突变
TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000178

染色体: Chr07 坐标: 1116999-1124993 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000178
名称SmilChr07G000178
描述protein argonaute 10-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向1116999 - 1124993 / +

ID 对照

NCBI Gene IDLOC130991369
GeneID130991369
locus_tag-
NCBI NameLOC130991369
原始查询LOC130991369

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein argonaute 10-like
产物protein argonaute 10-like
ArabidopsisAT5G43810 (AGO10)
Stabilizer of iron transporter SufD / Polynucleotidyl transferase [Source:NCBI gene (formerly Entrezgene);Acc:834403]
identity=80.7; qcov=1.02; evalue=0; confidence=high
RiceOs06g0597400 (PNH1)
-
identity=81.7; qcov=0.89; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0035194 (regulatory ncRNA-mediated post-transcriptional gene silencing)
KEGG-
PfamPF02170 (PAZ); PF02171 (Piwi); PF08699 (ArgoL1); PF16486 (ArgoN); PF16487 (ArgoMid); PF16488 (ArgoL2)
InterPro-
eggNOG-
NRGeneID:130991369

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057771523.1
2 Cytosol 细胞质基质 1.00000 XP_057771523.1
3 Cytoplasmic granule 细胞质颗粒 0.80000 XP_057771523.1
4 Cytoplasmic ribonucleoprotein granule Cytoplasmic ribonucleoprotein granule 0.80000 XP_057771523.1
5 Nucleus 细胞核 0.40000 XP_057771523.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:1119464 T TGC 2bp_insertion frameshift_variant 1 B95
Chr7:1119464 T TGC 2bp_insertion CDS_variant 1 B95
Chr7:1119586 G A EMS_canonical_SNV CDS_variant 1 B13
Chr7:1119665 C T EMS_canonical_SNV CDS_variant 1 B118
Chr7:1119673 G A EMS_canonical_SNV CDS_variant 1 C52
Chr7:1119699 G A EMS_canonical_SNV CDS_variant 4 B108,B99,C48,D5
Chr7:1119724 C T EMS_canonical_SNV CDS_variant 1 B94
Chr7:1119742 G A EMS_canonical_SNV CDS_variant 1 B7
Chr7:1119776 GA G 1bp_deletion frameshift_variant 41 A14,A20,A5,A8,B10,B108,B109,B112,B117,B126,B127,B140,B19,B21,B26,B30,B31,B32,B45,B52,B55,B64,B66,B68,B73,C19,C23,C26,C34,C4,C5,C52,C54,C57,C62,C75,C79,C8,C81,D7,D9
Chr7:1119801 C T EMS_canonical_SNV CDS_variant 1 B94
Chr7:1119839 C T EMS_canonical_SNV CDS_variant 4 B11,B17,B35,C82
Chr7:1120251 C T EMS_canonical_SNV CDS_variant 1 B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771523.1
974 aa
N
1
487
974
ArgoN
ArgoL1
PAZ
ArgoL2
ArgoMid
Piwi
C
PF16486 ArgoN 137-271 aa PF08699 ArgoL1 281-331 aa PF02170 PAZ 359-463 aa PF16488 ArgoL2 473-519 aa PF16487 ArgoMid 530-607 aa PF02171 Piwi 622-941 aa
XP_057771524.1
974 aa
N
1
487
974
ArgoN
ArgoL1
PAZ
ArgoL2
ArgoMid
Piwi
C
PF16486 ArgoN 137-271 aa PF08699 ArgoL1 281-331 aa PF02170 PAZ 359-463 aa PF16488 ArgoL2 473-519 aa PF16487 ArgoMid 530-607 aa PF02171 Piwi 622-941 aa
XP_057771526.1
974 aa
N
1
487
974
ArgoN
ArgoL1
PAZ
ArgoL2
ArgoMid
Piwi
C
PF16486 ArgoN 137-271 aa PF08699 ArgoL1 281-331 aa PF02170 PAZ 359-463 aa PF16488 ArgoL2 473-519 aa PF16487 ArgoMid 530-607 aa PF02171 Piwi 622-941 aa
XP_057771527.1
974 aa
N
1
487
974
ArgoN
ArgoL1
PAZ
ArgoL2
ArgoMid
Piwi
C
PF16486 ArgoN 137-271 aa PF08699 ArgoL1 281-331 aa PF02170 PAZ 359-463 aa PF16488 ArgoL2 473-519 aa PF16487 ArgoMid 530-607 aa PF02171 Piwi 622-941 aa
XP_057771528.1
974 aa
N
1
487
974
ArgoN
ArgoL1
PAZ
ArgoL2
ArgoMid
Piwi
C
PF16486 ArgoN 137-271 aa PF08699 ArgoL1 281-331 aa PF02170 PAZ 359-463 aa PF16488 ArgoL2 473-519 aa PF16487 ArgoMid 530-607 aa PF02171 Piwi 622-941 aa
XP_057771529.1
974 aa
N
1
487
974
ArgoN
ArgoL1
PAZ
ArgoL2
ArgoMid
Piwi
C
PF16486 ArgoN 137-271 aa PF08699 ArgoL1 281-331 aa PF02170 PAZ 359-463 aa PF16488 ArgoL2 473-519 aa PF16487 ArgoMid 530-607 aa PF02171 Piwi 622-941 aa
XP_057771530.1
974 aa
N
1
487
974
ArgoN
ArgoL1
PAZ
ArgoL2
ArgoMid
Piwi
C
PF16486 ArgoN 137-271 aa PF08699 ArgoL1 281-331 aa PF02170 PAZ 359-463 aa PF16488 ArgoL2 473-519 aa PF16487 ArgoMid 530-607 aa PF02171 Piwi 622-941 aa
XP_057771531.1
974 aa
N
1
487
974
ArgoN
ArgoL1
PAZ
ArgoL2
ArgoMid
Piwi
C
PF16486 ArgoN 137-271 aa PF08699 ArgoL1 281-331 aa PF02170 PAZ 359-463 aa PF16488 ArgoL2 473-519 aa PF16487 ArgoMid 530-607 aa PF02171 Piwi 622-941 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057771523.1 Pfam PF16486 ArgoN Domain 137 271 7.3e-35 121.2 N-terminal domain of argonaute
XP_057771523.1 Pfam PF08699 ArgoL1 Domain 281 331 1e-20 73.8 Argonaute linker 1 domain
XP_057771523.1 Pfam PF02170 PAZ Domain 359 463 4.6e-30 104.8 PAZ domain
XP_057771523.1 Pfam PF16488 ArgoL2 Family 473 519 7.2e-18 65.3 Argonaute linker 2 domain
XP_057771523.1 Pfam PF16487 ArgoMid Domain 530 607 7.3e-14 52.5 Mid domain of argonaute
XP_057771523.1 Pfam PF02171 Piwi Domain 622 941 7.5e-116 387.3 Piwi domain
XP_057771524.1 Pfam PF16486 ArgoN Domain 137 271 7.3e-35 121.2 N-terminal domain of argonaute
XP_057771524.1 Pfam PF08699 ArgoL1 Domain 281 331 1e-20 73.8 Argonaute linker 1 domain
XP_057771524.1 Pfam PF02170 PAZ Domain 359 463 4.6e-30 104.8 PAZ domain
XP_057771524.1 Pfam PF16488 ArgoL2 Family 473 519 7.2e-18 65.3 Argonaute linker 2 domain
XP_057771524.1 Pfam PF16487 ArgoMid Domain 530 607 7.3e-14 52.5 Mid domain of argonaute
XP_057771524.1 Pfam PF02171 Piwi Domain 622 941 7.5e-116 387.3 Piwi domain
XP_057771526.1 Pfam PF16486 ArgoN Domain 137 271 7.3e-35 121.2 N-terminal domain of argonaute
XP_057771526.1 Pfam PF08699 ArgoL1 Domain 281 331 1e-20 73.8 Argonaute linker 1 domain
XP_057771526.1 Pfam PF02170 PAZ Domain 359 463 4.6e-30 104.8 PAZ domain
XP_057771526.1 Pfam PF16488 ArgoL2 Family 473 519 7.2e-18 65.3 Argonaute linker 2 domain
XP_057771526.1 Pfam PF16487 ArgoMid Domain 530 607 7.3e-14 52.5 Mid domain of argonaute
XP_057771526.1 Pfam PF02171 Piwi Domain 622 941 7.5e-116 387.3 Piwi domain
XP_057771527.1 Pfam PF16486 ArgoN Domain 137 271 7.3e-35 121.2 N-terminal domain of argonaute
XP_057771527.1 Pfam PF08699 ArgoL1 Domain 281 331 1e-20 73.8 Argonaute linker 1 domain
XP_057771527.1 Pfam PF02170 PAZ Domain 359 463 4.6e-30 104.8 PAZ domain
XP_057771527.1 Pfam PF16488 ArgoL2 Family 473 519 7.2e-18 65.3 Argonaute linker 2 domain
XP_057771527.1 Pfam PF16487 ArgoMid Domain 530 607 7.3e-14 52.5 Mid domain of argonaute
XP_057771527.1 Pfam PF02171 Piwi Domain 622 941 7.5e-116 387.3 Piwi domain
XP_057771528.1 Pfam PF16486 ArgoN Domain 137 271 7.3e-35 121.2 N-terminal domain of argonaute
XP_057771528.1 Pfam PF08699 ArgoL1 Domain 281 331 1e-20 73.8 Argonaute linker 1 domain
XP_057771528.1 Pfam PF02170 PAZ Domain 359 463 4.6e-30 104.8 PAZ domain
XP_057771528.1 Pfam PF16488 ArgoL2 Family 473 519 7.2e-18 65.3 Argonaute linker 2 domain
XP_057771528.1 Pfam PF16487 ArgoMid Domain 530 607 7.3e-14 52.5 Mid domain of argonaute
XP_057771528.1 Pfam PF02171 Piwi Domain 622 941 7.5e-116 387.3 Piwi domain
XP_057771529.1 Pfam PF16486 ArgoN Domain 137 271 7.3e-35 121.2 N-terminal domain of argonaute
XP_057771529.1 Pfam PF08699 ArgoL1 Domain 281 331 1e-20 73.8 Argonaute linker 1 domain
XP_057771529.1 Pfam PF02170 PAZ Domain 359 463 4.6e-30 104.8 PAZ domain
XP_057771529.1 Pfam PF16488 ArgoL2 Family 473 519 7.2e-18 65.3 Argonaute linker 2 domain
XP_057771529.1 Pfam PF16487 ArgoMid Domain 530 607 7.3e-14 52.5 Mid domain of argonaute
XP_057771529.1 Pfam PF02171 Piwi Domain 622 941 7.5e-116 387.3 Piwi domain
XP_057771530.1 Pfam PF16486 ArgoN Domain 137 271 7.3e-35 121.2 N-terminal domain of argonaute
XP_057771530.1 Pfam PF08699 ArgoL1 Domain 281 331 1e-20 73.8 Argonaute linker 1 domain
XP_057771530.1 Pfam PF02170 PAZ Domain 359 463 4.6e-30 104.8 PAZ domain
XP_057771530.1 Pfam PF16488 ArgoL2 Family 473 519 7.2e-18 65.3 Argonaute linker 2 domain
XP_057771530.1 Pfam PF16487 ArgoMid Domain 530 607 7.3e-14 52.5 Mid domain of argonaute
XP_057771530.1 Pfam PF02171 Piwi Domain 622 941 7.5e-116 387.3 Piwi domain
XP_057771531.1 Pfam PF16486 ArgoN Domain 137 271 7.3e-35 121.2 N-terminal domain of argonaute
XP_057771531.1 Pfam PF08699 ArgoL1 Domain 281 331 1e-20 73.8 Argonaute linker 1 domain
XP_057771531.1 Pfam PF02170 PAZ Domain 359 463 4.6e-30 104.8 PAZ domain
XP_057771531.1 Pfam PF16488 ArgoL2 Family 473 519 7.2e-18 65.3 Argonaute linker 2 domain
XP_057771531.1 Pfam PF16487 ArgoMid Domain 530 607 7.3e-14 52.5 Mid domain of argonaute
XP_057771531.1 Pfam PF02171 Piwi Domain 622 941 7.5e-116 387.3 Piwi domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA
XM_057915540.1
TGTACACATATGTGCTTAGAGAAGGATGAAAATTCTGAGTGGAAAATTGGAATCAGCTTTTTAGTTAAATAGGCTGCGAATGGAGGCAGAAGAGGCAGGCATGGCAGCACATTTATTACACTCCCAAATTTAATCCAAGCAAAAAGATATAATCATCCAAAACCCACACACTCAACACGCACTCAAGGTGTGGCTGTGGCCCCCATTCCCTCCACCTTTCCCTTGAGCTTCAACCGACCGTTACAGCTTACCAAAGCTTG...
XM_057915547.1
TGTACACATATGTGCTTAGAGAAGGATGAAAATTCTGAGTGGAAAATTGGAATCAGCTTTTTAGTTAAATAGGCTGCGAATGGAGGCAGAAGAGGCAGGCATGGCAGCACATTTATTACACTCCCAAATTTAATCCAAGCAAAAAGATATAATCATCCAAAACCCACACACTCAACACGCACTCAAGGTGTGGCTGTGGCCCCCATTCCCTCCACCTTTCCCTTGAGCTTCAACCGACCGTTACAGCTTACCAAAGCTTG...

CDS

8 records

下载 CDS FASTA
LOC130991369
ATGCCTATAAGGCAGATGAAAGAAAATTCAGAGCAACACTTTATCATCAAACCCCAGCTGCAAAACTCCATGAATTCTGCTCCAAAGAGCTCAAAGTCTGCTCAGAATGGCAAAGGCCCACCAGTTCAGGAATCCCAGAACAAACAGACCTCACCTCCATCAAGAAACAGAGGAAGGAGAAGGGGTCGGGGCGGCCGGAAATCGGACCAAGGCGACGCCTTTATGCGGCCGAGCTCGCGGCCATGCACTGCAGCTGATAA...
LOC130991369
ATGCCTATAAGGCAGATGAAAGAAAATTCAGAGCAACACTTTATCATCAAACCCCAGCTGCAAAACTCCATGAATTCTGCTCCAAAGAGCTCAAAGTCTGCTCAGAATGGCAAAGGCCCACCAGTTCAGGAATCCCAGAACAAACAGACCTCACCTCCATCAAGAAACAGAGGAAGGAGAAGGGGTCGGGGCGGCCGGAAATCGGACCAAGGCGACGCCTTTATGCGGCCGAGCTCGCGGCCATGCACTGCAGCTGATAA...

Protein

8 records

下载 Protein FASTA
XP_057771523.1
MPIRQMKENSEQHFIIKPQLQNSMNSAPKSSKSAQNGKGPPVQESQNKQTSPPSRNRGRRRGRGGRKSDQGDAFMRPSSRPCTAADKPIVKENVRAIVPALSNNGGSSLCESDMGFPSSSKSLTFPLRPGFGQAGTKCIVKANHFFAELPDKDLNQYDVTITPEVTSRAVNRAIMAELVKLYKESELGTRLPAYDGRKSLYTAGELPFAWKEFTIKLIDDEDTINGPKREREYKVVIKFVAKASLHHLGQFLAGKRADGP...
XP_057771524.1
MPIRQMKENSEQHFIIKPQLQNSMNSAPKSSKSAQNGKGPPVQESQNKQTSPPSRNRGRRRGRGGRKSDQGDAFMRPSSRPCTAADKPIVKENVRAIVPALSNNGGSSLCESDMGFPSSSKSLTFPLRPGFGQAGTKCIVKANHFFAELPDKDLNQYDVTITPEVTSRAVNRAIMAELVKLYKESELGTRLPAYDGRKSLYTAGELPFAWKEFTIKLIDDEDTINGPKREREYKVVIKFVAKASLHHLGQFLAGKRADGP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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