当前解析结果
SmilChr07G000186| 统一新 Gene ID | SmilChr07G000186 |
|---|---|
| 名称 | SmilChr07G000186 |
| 描述 | early light-induced protein 1, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1178951 - 1180616 / + |
| NCBI Gene ID | LOC130991378 |
|---|---|
| GeneID | 130991378 |
| locus_tag | - |
| NCBI Name | LOC130991378 |
| 原始查询 | LOC130991378 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | early light-induced protein 1, chloroplastic |
| 产物 | early light-induced protein 1%2C chloroplastic |
| Arabidopsis | AT3G22840 (ELIP1)Chlorophyll A-B binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:821855] identity=67; qcov=0.647; evalue=7.96e-49; confidence=medium |
| Rice | Os07g0178800- identity=59.1; qcov=0.665; evalue=2.11e-40; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991378 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057771539.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057771539.1 |
| 3 | Chloroplast thylakoid membrane | 类囊体膜 | 1.00000 | XP_057771539.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771539.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771539.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1179111 |
TG |
T |
1bp_deletion | frameshift_variant | 11 | A9,B132,B37,B42,B43,B73,B74,B77,C20,C22,C52 |
Chr7:1180131 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C55,C85 |
Chr7:1180178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B48,B53,B58,B66,B78 |
Chr7:1180212 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,D10 |
Chr7:1180239 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B2 |
Chr7:1180239 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B2 |
Chr7:1180242 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,B2,B20 |
Chr7:1180270 |
T |
TCG |
2bp_insertion | frameshift_variant | 1 | D3 |
Chr7:1180270 |
T |
TCG |
2bp_insertion | CDS_variant | 1 | D3 |
Chr7:1180420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。