当前解析结果
SmilChr07G000201| 统一新 Gene ID | SmilChr07G000201 |
|---|---|
| 名称 | SmilChr07G000201 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1258362 - 1261543 / - |
| NCBI Gene ID | LOC130991395 |
|---|---|
| GeneID | 130991395 |
| locus_tag | - |
| NCBI Name | LOC130991395 |
| 原始查询 | LOC130991395 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT1G10920 (LOV1)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:837635] identity=33.8; qcov=0.63; evalue=8.52e-74; confidence=low |
| Rice | Os07g0186500- identity=32.6; qcov=0.827; evalue=1.35e-76; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991395 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057771565.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057771565.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771565.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771565.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771565.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1258993 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B94,C21,C46 |
Chr7:1259049 |
T |
TTG |
2bp_insertion | frameshift_variant | 9 | A4,B133,B15,B41,B70,B72,B88,C29,C3 |
Chr7:1259062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:1259094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B112,B122,B88,C21,C84 |
Chr7:1259110 |
AAC |
A |
2bp_deletion | frameshift_variant | 50 | A1,A13,A3,A6,B1,B11,B113,B120,B121,B129,B13,B132,B137,B140,B18,B29,B35,B40,B43,B55,B56,B57,B60,B62,B73,B75,B79,B8,B81,B91,B92,B98,B99,C14,C23,C25,C36,C42,C48,C52,C53,C55,C58,C63,C67,C72,C74,C75,C77,D9 |
Chr7:1259118 |
AC |
A |
1bp_deletion | frameshift_variant | 51 | A16,A21,A23,A3,A8,B101,B102,B103,B115,B119,B120,B131,B139,B15,B18,B20,B25,B27,B28,B30,B34,B41,B5,B54,B58,B60,B68,B73,B83,B88,B94,C11,C12,C13,C16,C26,C28,C33,C34,C36,C37,C55,C63,C64,C68,C83,C86,C87,D6,D8,D9 |
Chr7:1259121 |
A |
AC |
1bp_insertion | frameshift_variant | 44 | A13,A23,B1,B11,B113,B115,B120,B129,B13,B134,B137,B14,B140,B25,B28,B29,B34,B35,B40,B43,B54,B55,B56,B57,B62,B75,B79,B81,B98,C17,C23,C42,C52,C53,C58,C67,C68,C70,C74,C75,C77,C82,C84,D1 |
Chr7:1259186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,B123,B55,C72,C82 |
Chr7:1259259 |
TAC |
T |
2bp_deletion | frameshift_variant | 15 | A20,B106,B112,B122,B131,B4,B46,B62,B63,B68,B88,C22,C3,C76,C84 |
Chr7:1259270 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr7:1259291 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B34 |
Chr7:1259317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B54,B73,C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771565.1PF00931
NB-ARC 175-343 aa
PF23559
WHD_DRP 428-499 aa
PF23598
LRR_14 548-774 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771565.1 |
Pfam | PF00931 |
NB-ARC | Domain | 175 | 343 | 5.5e-42 | 144.0 | NB-ARC domain |
XP_057771565.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 428 | 499 | 1.9e-19 | 70.2 | Disease resistance protein Winged helix domain |
XP_057771565.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 548 | 774 | 8.3e-11 | 42.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。