Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003261`

染色体: Chr01 坐标: 51310626-51319042 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003261`
名称	SmilChr01G003261
描述	beta-galactosidase 17
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51310626 - 51319042 / `+`

ID 对照

NCBI Gene ID	`LOC130991399`
GeneID	`130991399`
locus_tag	`-`
NCBI Name	`LOC130991399`
原始查询	`LOC130991399`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-galactosidase 17
产物	beta-galactosidase 17
Arabidopsis	`AT1G72990` (BGAL17) beta-galactosidase 17 [Source:NCBI gene (formerly Entrezgene);Acc:843630] identity=64.2; qcov=0.968; evalue=0; confidence=high
Rice	`Os05g0539400` (OsBgal9) - identity=61.4; qcov=0.933; evalue=0; confidence=high
GO	GO:0004565 (beta-galactosidase activity); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process)
KEGG	smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00511 (Other glycan degradation - Salvia miltiorrhiza (redroot sage)); smil00531 (Glycosaminoglycan degradation - Salvia miltiorrhiza (redroot sage)); smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00604 (Glycosphingolipid biosynthesis - ganglio series - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01301 (Glyco_hydro_35); PF02449 (Glyco_hydro_42); PF13364 (BetaGal_ABD2); PF21317 (BetaGal_ABD_1); PF21467 (BetaGal_gal-bd)
InterPro	-
eggNOG	-
NR	GeneID:130991399

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057771590.1`
2	Golgi apparatus	高尔基体	0.40000	`XP_057771590.1`
3	Nucleus	细胞核	0.00000	`XP_057771590.1`
4	Chromosome	染色体	0.00000	`XP_057771590.1`
5	Centromere	着丝粒	0.00000	`XP_057771590.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51310761`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,A6,C54
`Chr1:51310773`	`ACC`	`A`	2bp_deletion	frameshift_variant	10	A5,A9,B124,B19,B23,B54,B7,C21,C45,D2
`Chr1:51311858`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr1:51312234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B11,B131,B2,C10
`Chr1:51313709`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr1:51314492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B126,B80,C6,C63,C67
`Chr1:51315285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B133
`Chr1:51315306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B113,B124,C40,C65
`Chr1:51315326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,C62
`Chr1:51316449`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B28,B59,C38,C75
`Chr1:51316545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B11,B131,B2,C10
`Chr1:51316548`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771590.1

689 aa

344

689

Glyco_hydro_35

Glyco_hydro_42

BetaGal_ABD_1

BetaGal_ABD2

BetaGal_gal-bd

PF01301 Glyco_hydro_35 57-382 aa PF02449 Glyco_hydro_42 74-164 aa PF21317 BetaGal_ABD_1 429-548 aa PF13364 BetaGal_ABD2 587-654 aa PF21467 BetaGal_gal-bd 590-649 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771590.1`	Pfam	`PF01301`	Glyco_hydro_35	Domain	57	382	4.5e-115	385.3	Glycosyl hydrolases family 35
`XP_057771590.1`	Pfam	`PF02449`	Glyco_hydro_42	Domain	74	164	1.9e-05	24.9	Beta-galactosidase
`XP_057771590.1`	Pfam	`PF21317`	BetaGal_ABD_1	Domain	429	548	8.5e-25	87.6	Beta-galactosidase, first all-beta domain
`XP_057771590.1`	Pfam	`PF13364`	BetaGal_ABD2	Domain	587	654	9.4e-05	23.8	Beta-galactosidase second all-beta domain
`XP_057771590.1`	Pfam	`PF21467`	BetaGal_gal-bd	Domain	590	649	4.2e-22	78.8	Beta-galactosidase, galactose-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915607.1
ATCGGCCCGTACAAGTTACAAGTGAAGTGATGATGCTTGGAAGCACGAAGCAGCAGCAGCAGCAGCAGCTTCAGCTCAGTTGATCGCAAAACACTAAAACTGGCAACTGGGCTCCATCATTCGCTCACAAAAATGGCAAGAAACCGAACCCTAAGGAGAGCTACGCCCTTAATATTTACTTTCTTCATAGCCCTCTTTGTCTTGGGTGTTTTTGCTCCTCTGCCGTCCACTTCCCATAATTCTCCCCAATTTCAACTGGA...

CDS

1 records

下载 CDS FASTA

LOC130991399
ATGGCAAGAAACCGAACCCTAAGGAGAGCTACGCCCTTAATATTTACTTTCTTCATAGCCCTCTTTGTCTTGGGTGTTTTTGCTCCTCTGCCGTCCACTTCCCATAATTCTCCCCAATTTCAACTGGATAATGGATACACACATAAGTTTGAGATTGCAGAGGACATGTTTTGGAGAGATGGGGAGCCATTTAGGATAATTGGAGGAGACTTGCATTATTTCCGAGTGCATCCTGAGTACTGGAGAGATCGACTGCTGAG...

Protein

1 records

下载 Protein FASTA

XP_057771590.1
MARNRTLRRATPLIFTFFIALFVLGVFAPLPSTSHNSPQFQLDNGYTHKFEIAEDMFWRDGEPFRIIGGDLHYFRVHPEYWRDRLLRAKALGLNTVQTYVPWNLHEPKKGHLVFEGIADIISFLELCKELDMLVMLRAGPYICGEWDLGGFPAWLLAEEPAIRLRSSDPAYLGLVEKWWGILLPKVSPLLFSNGGPIVMVQIENEFGSYGDDKAYLHYLVKLARRHLGDDIILYTTDGGARENLEKGTIRGDAVFSAVDF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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