Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000238`

染色体: Chr07 坐标: 1531532-1547789 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000238`
名称	SmilChr07G000238
描述	protein RDM1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1531532 - 1547789 / `-`

ID 对照

NCBI Gene ID	`LOC130991436`
GeneID	`130991436`
locus_tag	`-`
NCBI Name	`LOC130991436`
原始查询	`LOC130991436`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein RDM1
产物	protein RDM1
Arabidopsis	`AT3G22680` (RDM1) RNA-DIRECTED DNA METHYLATION 1 [Source:NCBI gene (formerly Entrezgene);Acc:821839] identity=55; qcov=0.952; evalue=9.14e-59; confidence=high
Rice	`Os06g0630300` - identity=60; qcov=0.714; evalue=1.28e-52; confidence=high
GO	GO:0000419 (RNA polymerase V complex); GO:0005634 (nucleus); GO:0044030 (GO:0044030)
KEGG	-
Pfam	PF09187 (RdDM_RDM1)
InterPro	-
eggNOG	-
NR	GeneID:130991436

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771646.1`
2	Chromosome	染色体	1.00000	`XP_057771646.1`
3	Nucleoplasm	核质	0.40000	`XP_057771647.1`
4	Cytoplasm	细胞质	0.20000	`XP_057771647.1`
5	Centromere	着丝粒	0.00000	`XP_057771646.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1531643`	`G`	`GA`	1bp_insertion	frameshift_variant	42	A1,A16,A21,A3,B1,B10,B108,B11,B114,B119,B127,B128,B134,B20,B27,B30,B41,B45,B55,B66,B72,B75,B83,B93,B95,C12,C14,C19,C30,C32,C34,C40,C44,C51,C53,C7,C75,C78,C83,C86,C87,D3
`Chr7:1531666`	`G`	`A`	EMS_canonical_SNV	stop_gained	27	B11,B114,B119,B127,B20,B21,B22,B23,B27,B55,B64,B75,B83,B93,B96,C12,C13,C44,C53,C56,C58,C61,C7,C72,C75,C78,C86
`Chr7:1531688`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B91,B95,C26,C6
`Chr7:1531727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,C28
`Chr7:1531742`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr7:1531750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,C4
`Chr7:1531854`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr7:1531858`	`AG`	`A`	1bp_deletion	frameshift_variant	3	B118,B44,D6
`Chr7:1531858`	`AG`	`A`	1bp_deletion	CDS_variant	3	B118,B44,D6
`Chr7:1531881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:1531889`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr7:1531895`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771646.1

168 aa

168

RdDM_RDM1

PF09187 RdDM_RDM1 47-165 aa

XP_057771647.1

181 aa

181

RdDM_RDM1

PF09187 RdDM_RDM1 60-178 aa

XP_057771648.1

168 aa

168

RdDM_RDM1

PF09187 RdDM_RDM1 47-165 aa

XP_057771650.1

168 aa

168

RdDM_RDM1

PF09187 RdDM_RDM1 47-165 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771646.1`	Pfam	`PF09187`	RdDM_RDM1	Domain	47	165	4.5e-60	201.6	RNA-directed DNA methylation 1
`XP_057771647.1`	Pfam	`PF09187`	RdDM_RDM1	Domain	60	178	5.3e-60	201.4	RNA-directed DNA methylation 1
`XP_057771648.1`	Pfam	`PF09187`	RdDM_RDM1	Domain	47	165	4.5e-60	201.6	RNA-directed DNA methylation 1
`XP_057771650.1`	Pfam	`PF09187`	RdDM_RDM1	Domain	47	165	4.5e-60	201.6	RNA-directed DNA methylation 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057915667.1
AAGGAAAAGCAACTCTGCGGTATAATTGATTTTGCTCTATTTGGATATAATCCTTTTCTTTTTTTTAGGAAAATTTGGATATCTGATTTTGCTCTATTTGGAACCAGCCAAGAACTCTCTCTGCATCTTGTGTAGCCATGAAGAGGCCTGCATCTAGTCAGCAAGTGGAGATTTCATCAGACGACGACTCGTCTTCATCTGAAGCGGAAAATGATGATTCACGGAGCCAGAAGCCAAATGACGAACCTGCCCTAGAATTA...

XM_057915663.1
GCTCAAGTTTGATTTGCAAACCAAAATCAAGCCTCTAAAAATTAAAGAAATTAAAAATAAAAATAAAGGAAAAGCAACTCTGCGGTATAATCTGATTTTGCTCTATTTGGATATAATCTTTTTTTTTTTTGAGGAAAATTTGGAACCAGCCAAGAATCGGTTTCTCTCTCTCTCTGCATCTTGTGTAGCCATGAAGAGGCCTGCATCTAGTCAGCAAGTGGAGATTTCATCAGACGACGACTCGTCTTCATCTGAAGCGG...

CDS

4 records

下载 CDS FASTA

LOC130991436
ATGCGTCTTACTGCACCGCCTTATTTACGGGGTGTAGCCATGAAGAGGCCTGCATCTAGTCAGCAAGTGGAGATTTCATCAGACGACGACTCGTCTTCATCTGAAGCGGAAAATGATGATTCACGGAGCCAGAAGCCAAATGACGAACCTGCCCTAGAATTATCTGCTGAAGCATGGCTGTTCAGAAGAGCAGCAAGCTACCAAGAATACATGAAGTCGATCCCGATACCGACTAAGCGGAGCGCTGTTATTCCCTACAC...

LOC130991436
ATGAAGAGGCCTGCATCTAGTCAGCAAGTGGAGATTTCATCAGACGACGACTCGTCTTCATCTGAAGCGGAAAATGATGATTCACGGAGCCAGAAGCCAAATGACGAACCTGCCCTAGAATTATCTGCTGAAGCATGGCTGTTCAGAAGAGCAGCAAGCTACCAAGAATACATGAAGTCGATCCCGATACCGACTAAGCGGAGCGCTGTTATTCCCTACACGTCGTGGACCGGACTCGGAGCCTCGATGAAGCAGATGTA...

Protein

4 records

下载 Protein FASTA

XP_057771646.1
MKRPASSQQVEISSDDDSSSSEAENDDSRSQKPNDEPALELSAEAWLFRRAASYQEYMKSIPIPTKRSAVIPYTSWTGLGASMKQMYEQPLHYLTNIHLQRMDRERLGAEDEDVPLDLIIHPCKAEVTIWLVEEIHRRTSSPHHLAQLWAADPMYHAFIDAIFPKLGS

XP_057771647.1
MRLTAPPYLRGVAMKRPASSQQVEISSDDDSSSSEAENDDSRSQKPNDEPALELSAEAWLFRRAASYQEYMKSIPIPTKRSAVIPYTSWTGLGASMKQMYEQPLHYLTNIHLQRMDRERLGAEDEDVPLDLIIHPCKAEVTIWLVEEIHRRTSSPHHLAQLWAADPMYHAFIDAIFPKLGS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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