Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000249`

染色体: Chr07 坐标: 1591471-1594950 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000249`
名称	SmilChr07G000249
描述	protein CDC73 homolog
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	1591471 - 1594950 / `-`

ID 对照

NCBI Gene ID	`LOC130991445`
GeneID	`130991445`
locus_tag	`-`
NCBI Name	`LOC130991445`
原始查询	`LOC130991445`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein CDC73 homolog
产物	protein CDC73 homolog
Arabidopsis	`AT3G22590` (PHP) PLANT HOMOLOGOUS TO PARAFIBROMIN [Source:NCBI gene (formerly Entrezgene);Acc:821831] identity=62.3; qcov=1.1; evalue=1.16e-171; confidence=high
Rice	`Os03g0664700` (OSJNBb0031A14.2) - identity=51.7; qcov=1.03; evalue=9.67e-125; confidence=high
GO	GO:0000993 (RNA polymerase II complex binding); GO:0006368 (transcription elongation by RNA polymerase II); GO:0016570 (GO:0016570); GO:0016593 (Cdc73/Paf1 complex); GO:0032968 (positive regulation of transcription elongation by RNA polymerase II); GO:0034402 (GO:0034402)
KEGG	-
Pfam	PF05179 (CDC73_C); PF16050 (CDC73_N)
InterPro	-
eggNOG	-
NR	GeneID:130991445

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771662.1`
2	Cytoplasm	细胞质	0.40000	`XP_057771662.1`
3	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057771662.1`
4	Chromosome	染色体	0.00000	`XP_057771662.1`
5	Centromere	着丝粒	0.00000	`XP_057771662.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:1594001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr7:1594309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B60,C17
`Chr7:1594364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr7:1594439`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:1594472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C37,C79
`Chr7:1594725`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C7
`Chr7:1594725`	`CG`	`C`	1bp_deletion	CDS_variant	1	C7
`Chr7:1594745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B135,B64,C63,D5
`Chr7:1594748`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771662.1

379 aa

190

379

CDC73_N

CDC73_C

PF16050 CDC73_N 2-112 aa PF05179 CDC73_C 219-373 aa

XP_057771663.1

379 aa

190

379

CDC73_N

CDC73_C

PF16050 CDC73_N 2-112 aa PF05179 CDC73_C 219-373 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771662.1`	Pfam	`PF16050`	CDC73_N	Family	2	112	1.4e-22	81.1	Paf1 complex subunit CDC73 N-terminal
`XP_057771662.1`	Pfam	`PF05179`	CDC73_C	Domain	219	373	1.1e-51	175.3	RNA pol II accessory factor, Cdc73 family, C-terminal
`XP_057771663.1`	Pfam	`PF16050`	CDC73_N	Family	2	112	1.4e-22	81.1	Paf1 complex subunit CDC73 N-terminal
`XP_057771663.1`	Pfam	`PF05179`	CDC73_C	Domain	219	373	1.1e-51	175.3	RNA pol II accessory factor, Cdc73 family, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009091151.1
TATGTGTATTTAGTAATTGAAATATTGAAATATTCGATGAATTGTGGCACTAAAACCCTGAAAATAAAATCTGCCTAATCGAAAACTCTTGAGCACCACCGCTCCTCCGCGGCGCGGCCTCCGTTTCCGATGGACCCCTTAACCCTCCTCCGTGAATACACCATCAGCAACTCGCTCGACCGAATCGTCCGAGTCAGCGACGATTTCCGCTTCGGCTCCGACTACTCCTTCCCCGCCACCATCGAGACCGCCTACCGCTC...

XM_057915679.1
ATTATCGTGGACGGATGGAGCAGTGTTAAGTGTTAACCCACACTTATGTGTATTTAGTAATTGAAATATTGAAATATTCGATGAATTGTGGCACTAAAACCCTGAAAATAAAATCTGCCTAATCGAAAACTCTTGAGCACCACCGCTCCTCCGCGGCGCGGCCTCCGTTTCCGATGGACCCCTTAACCCTCCTCCGTGAATACACCATCAGCAACTCGCTCGACCGAATCGTCCGAGTCAGCGACGATTTCCGCTTCGGC...

CDS

2 records

下载 CDS FASTA

LOC130991445
ATGGACCCCTTAACCCTCCTCCGTGAATACACCATCAGCAACTCGCTCGACCGAATCGTCCGAGTCAGCGACGATTTCCGCTTCGGCTCCGACTACTCCTTCCCCGCCACCATCGAGACCGCCTACCGCTCCAAGCACGTGCAGCAGACGCGCCGCTACACCCTCGAAACCCTAGTCCACTTCATCACCAACCACCACCTCAAGCACACCGAATACATCCAGAACGCCCGCGCCCTCCGCATCCCCGCCGTCACGCTCCC...

Protein

2 records

下载 Protein FASTA

XP_057771662.1
MDPLTLLREYTISNSLDRIVRVSDDFRFGSDYSFPATIETAYRSKHVQQTRRYTLETLVHFITNHHLKHTEYIQNARALRIPAVTLPDRKPLLDYLTGKVQSSDSIVPLDFPNINPQISNVDRSLQYEAGDAVGLDNGTSLIELIRAKEKPIKDKEAMLVFKKRDFYSVLTSALKRDEERQRTEALQRKDNIVAKNRIESRGFGVGEEATKMRKIGEGVPIILVPSAFSTLITIYNVKEFLEDGVFIPTDVKLKQMKGGK...

XP_057771663.1
MDPLTLLREYTISNSLDRIVRVSDDFRFGSDYSFPATIETAYRSKHVQQTRRYTLETLVHFITNHHLKHTEYIQNARALRIPAVTLPDRKPLLDYLTGKVQSSDSIVPLDFPNINPQISNVDRSLQYEAGDAVGLDNGTSLIELIRAKEKPIKDKEAMLVFKKRDFYSVLTSALKRDEERQRTEALQRKDNIVAKNRIESRGFGVGEEATKMRKIGEGVPIILVPSAFSTLITIYNVKEFLEDGVFIPTDVKLKQMKGGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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