当前解析结果
SmilChr07G000259| 统一新 Gene ID | SmilChr07G000259 |
|---|---|
| 名称 | SmilChr07G000259 |
| 描述 | uncharacterized SmilChr07G000259 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 1669730 - 1672097 / + |
| NCBI Gene ID | LOC130991456 |
|---|---|
| GeneID | 130991456 |
| locus_tag | - |
| NCBI Name | LOC130991456 |
| 原始查询 | LOC130991456 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | C-8 sterol isomerase [Source:NCBI gene (formerly Entrezgene);Acc:837045]; symbol=AT1G05440; hit=AT1G05440; species=arabidopsis; confidence=medium |
| 产物 | C-8 sterol isomerase [Source:NCBI gene (formerly Entrezgene);Acc:837045]; symbol=AT1G05440; hit=AT1G05440; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G05440 (AT1G05440)C-8 sterol isomerase [Source:NCBI gene (formerly Entrezgene);Acc:837045] identity=39.2; qcov=0.966; evalue=5.62e-77; confidence=medium |
| Rice | Os03g0747100- identity=30.8; qcov=0.857; evalue=4.45e-33; confidence=low |
| GO | GO:0005783 (endoplasmic reticulum) |
| KEGG | - |
| Pfam | PF04622 (ERG2_Sigma1R) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991456 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.60000 | XP_057771677.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057771677.1 |
| 3 | Nucleus membrane | 核膜 | 0.40000 | XP_057771677.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057771677.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057771677.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:1669987 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:1670019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,B131,B35,B68,C82 |
Chr7:1670036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:1670076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr7:1670112 |
CA |
C |
1bp_deletion | frameshift_variant | 8 | B3,B4,B54,C12,C15,C21,C42,C47 |
Chr7:1670139 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr7:1670189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,C29,C3,C56,D7 |
Chr7:1670232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B139,B59 |
Chr7:1670244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:1670254 |
TTC |
T |
2bp_deletion | frameshift_variant | 2 | B59,C2 |
Chr7:1670254 |
TTC |
T |
2bp_deletion | CDS_variant | 2 | B59,C2 |
Chr7:1670288 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | C31,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771677.1PF04622
ERG2_Sigma1R 174-301 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771677.1 |
Pfam | PF04622 |
ERG2_Sigma1R | Family | 174 | 301 | 6.6e-05 | 23.1 | ERG2 and Sigma1 receptor like protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。