当前解析结果
SmilChr07G000316| 统一新 Gene ID | SmilChr07G000316 |
|---|---|
| 名称 | SmilChr07G000316 |
| 描述 | sugar transport protein 8-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2110186 - 2113364 / + |
| NCBI Gene ID | LOC130991512 |
|---|---|
| GeneID | 130991512 |
| locus_tag | - |
| NCBI Name | LOC130991512 |
| 原始查询 | LOC130991512 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sugar transport protein 8-like |
| 产物 | sugar transport protein 8-like |
| Arabidopsis | AT5G26250 (AT5G26250)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832694] identity=62.7; qcov=0.98; evalue=0; confidence=high |
| Rice | Os03g0218400 (OsMST4)- identity=59.2; qcov=0.984; evalue=0; confidence=high |
| GO | GO:0015145 (monosaccharide transmembrane transporter activity); GO:0015749 (monosaccharide transmembrane transport); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991512 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057771754.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057771754.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771754.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771754.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771754.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2110472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:2110648 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | B43 |
Chr7:2110648 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | B43 |
Chr7:2110703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr7:2110756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr7:2110767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr7:2111424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr7:2111442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B88,C2 |
Chr7:2111520 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr7:2111528 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,C1 |
Chr7:2111533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr7:2111580 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B122,B78,C1,C41,C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771754.1PF00083
Sugar_tr 21-475 aa
PF07690
MFS_1 69-426 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771754.1 |
Pfam | PF00083 |
Sugar_tr | Family | 21 | 475 | 1.2e-121 | 407.5 | Sugar (and other) transporter |
XP_057771754.1 |
Pfam | PF07690 |
MFS_1 | Family | 69 | 426 | 2.8e-29 | 102.9 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。