当前解析结果
SmilChr07G000319| 统一新 Gene ID | SmilChr07G000319 |
|---|---|
| 名称 | SmilChr07G000319 |
| 描述 | cyclin-T1-4-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2142828 - 2148715 / + |
| NCBI Gene ID | LOC130991514 |
|---|---|
| GeneID | 130991514 |
| locus_tag | - |
| NCBI Name | LOC130991514 |
| 原始查询 | LOC130991514 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cyclin-T1-4-like |
| 产物 | cyclin-T1-4-like |
| Arabidopsis | AT4G19600 (CYCT1;4)Cyclin family protein [Source:NCBI gene (formerly Entrezgene);Acc:827702] identity=48.4; qcov=0.622; evalue=5.32e-75; confidence=high |
| Rice | Os12g0485400 (CycT1)- identity=49.6; qcov=0.597; evalue=3.21e-74; confidence=medium |
| GO | GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0008024 (cyclin/CDK positive transcription elongation factor complex); GO:0032786 (positive regulation of DNA-templated transcription, elongation); GO:0061575 (cyclin-dependent protein serine/threonine kinase activator activity) |
| KEGG | smil03250 (Viral life cycle - HIV-1 - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00134 (Cyclin_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991514 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771756.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057771757.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771756.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771756.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771756.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2143697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr7:2143698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B78 |
Chr7:2143802 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B128,B99,C19 |
Chr7:2143838 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B140,B37,C29,D4 |
Chr7:2143997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:2144087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B104,B73,C27 |
Chr7:2144131 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,C41 |
Chr7:2144144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,C54 |
Chr7:2144502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:2144736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:2144796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B109,B13,B95,C3 |
Chr7:2144799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771756.1PF00134
Cyclin_N 174-301 aa
XP_057771757.1PF00134
Cyclin_N 174-301 aa
XP_057771758.1PF00134
Cyclin_N 174-301 aa
XP_057771759.1PF00134
Cyclin_N 174-301 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771756.1 |
Pfam | PF00134 |
Cyclin_N | Domain | 174 | 301 | 1.3e-15 | 58.0 | Cyclin, N-terminal domain |
XP_057771757.1 |
Pfam | PF00134 |
Cyclin_N | Domain | 174 | 301 | 7.6e-14 | 52.2 | Cyclin, N-terminal domain |
XP_057771758.1 |
Pfam | PF00134 |
Cyclin_N | Domain | 174 | 301 | 7.2e-14 | 52.3 | Cyclin, N-terminal domain |
XP_057771759.1 |
Pfam | PF00134 |
Cyclin_N | Domain | 174 | 301 | 1.3e-15 | 58.0 | Cyclin, N-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。