当前解析结果
SmilChr07G000321| 统一新 Gene ID | SmilChr07G000321 |
|---|---|
| 名称 | SmilChr07G000321 |
| 描述 | uncharacterized SmilChr07G000321 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2166109 - 2167200 / + |
| NCBI Gene ID | LOC130991518 |
|---|---|
| GeneID | 130991518 |
| locus_tag | - |
| NCBI Name | LOC130991518 |
| 原始查询 | LOC130991518 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819769]; symbol=AT3G05980; hit=AT3G05980; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819769]; symbol=AT3G05980; hit=AT3G05980; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G05980 (AT3G05980)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819769] identity=43.2; qcov=0.829; evalue=7.52e-39; confidence=medium |
| Rice | Os06g0675200- identity=32; qcov=0.377; evalue=1.49e-06; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991518 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057771761.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057771761.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057771761.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771761.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771761.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2166264 |
T |
TGG |
2bp_insertion | frameshift_variant | 3 | B138,C33,C46 |
Chr7:2166264 |
T |
TGG |
2bp_insertion | CDS_variant | 3 | B138,C33,C46 |
Chr7:2166312 |
T |
TCC |
2bp_insertion | frameshift_variant | 2 | B2,C1 |
Chr7:2166312 |
T |
TCC |
2bp_insertion | CDS_variant | 2 | B2,C1 |
Chr7:2166334 |
AT |
A |
1bp_deletion | frameshift_variant | 89 | A1,A11,A19,A21,A22,A23,A24,A6,A8,B1,B101,B102,B103,B105,B108,B109,B111,B118,B12,B124,B127,B129,B132,B135,B137,B138,B139,B19,B25,B29,B32,B38,B39,B41,B42,B43,B44,B51,B52,B54,B56,B57,B58,B62,B63,B66,B72,B77,B78,B8,B80,B82,B87,B89,B93,B96,C10,C12,C16,C17,C20,C27,C32,C33,C37,C45,C46,C48,C5,C54,C55,C60,C63,C64,C66,C68,C71,C77,C79,C80,C83,C84,C85,C86,D3,D4,D5,D6,D7 |
Chr7:2166340 |
TC |
T |
1bp_deletion | frameshift_variant | 87 | A10,A14,A18,A19,A2,A20,A3,A5,A6,A7,B100,B106,B113,B115,B119,B120,B123,B125,B129,B134,B137,B15,B2,B20,B24,B26,B27,B28,B3,B31,B33,B34,B35,B37,B38,B39,B4,B45,B49,B5,B52,B53,B59,B60,B61,B64,B66,B67,B71,B72,B75,B76,B79,B8,B81,B82,B84,B85,B86,B91,B94,B95,C15,C19,C2,C23,C28,C29,C31,C37,C4,C50,C52,C56,C58,C62,C65,C7,C71,C72,C79,C8,C83,C87,D2,D7,D9 |
Chr7:2166396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C77,C86 |
Chr7:2166400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B132,B19,B42,B43,B62 |
Chr7:2166472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:2166516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,C41 |
Chr7:2166685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:2166689 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,B127,B8,C78,C85 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。