当前解析结果
SmilChr07G000331| 统一新 Gene ID | SmilChr07G000331 |
|---|---|
| 名称 | SmilChr07G000331 |
| 描述 | E3 ubiquitin-protein ligase RHF1A-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2249358 - 2251034 / + |
| NCBI Gene ID | LOC130991529 |
|---|---|
| GeneID | 130991529 |
| locus_tag | - |
| NCBI Name | LOC130991529 |
| 原始查询 | LOC130991529 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase RHF1A-like |
| 产物 | E3 ubiquitin-protein ligase RHF1A-like |
| Arabidopsis | AT4G14220 (RHF1A)RING-H2 group F1A [Source:NCBI gene (formerly Entrezgene);Acc:827062] identity=59.7; qcov=0.303; evalue=1.99e-26; confidence=low |
| Rice | Os11g0572500 (OsRFP)- identity=51.2; qcov=0.345; evalue=3.68e-23; confidence=low |
| GO | GO:0004842 (ubiquitin-protein transferase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991529 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057771781.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057771781.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057771781.1 |
| 4 | Cell membrane | 细胞膜 | 0.40000 | XP_057771781.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771781.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2249511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:2249993 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B120 |
Chr7:2249993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr7:2249996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr7:2250374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr7:2250583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,C47 |
Chr7:2250664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr7:2250673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B77,C54 |
Chr7:2250792 |
CG |
C |
1bp_deletion | frameshift_variant | 26 | A13,A3,B1,B115,B130,B137,B2,B20,B40,B5,B52,B59,B86,B90,B92,B98,C17,C19,C21,C35,C61,C65,C70,C82,C83,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771781.1PF17123
zf-RING_11 24-51 aa
PF13445
zf-RING_UBOX 24-62 aa
PF00097
zf-C3HC4 24-64 aa
PF12678
zf-rbx1 24-64 aa
PF13639
zf-RING_2 24-64 aa
PF13923
zf-C3HC4_2 24-64 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771781.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 24 | 51 | 3.1e-07 | 30.7 | RING-like zinc finger |
XP_057771781.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 24 | 62 | 9.8e-08 | 32.6 | RING-type zinc-finger |
XP_057771781.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 24 | 64 | 5e-07 | 30.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057771781.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 24 | 64 | 1.4e-08 | 35.5 | RING-H2 zinc finger domain |
XP_057771781.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 24 | 64 | 2.3e-10 | 41.3 | Ring finger domain |
XP_057771781.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 24 | 64 | 5.1e-07 | 30.1 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。