当前解析结果
SmilChr01G003276| 统一新 Gene ID | SmilChr01G003276 |
|---|---|
| 名称 | SmilChr01G003276 |
| 描述 | putative disease resistance protein RGA4 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51463545 - 51466723 / - |
| NCBI Gene ID | LOC130991539 |
|---|---|
| GeneID | 130991539 |
| locus_tag | - |
| NCBI Name | LOC130991539 |
| 原始查询 | LOC130991539 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA4 |
| 产物 | putative disease resistance protein RGA4 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=29.3; qcov=1.01; evalue=1.84e-100; confidence=low |
| Rice | Os05g0380300 (A1.1-4)- identity=30.9; qcov=0.969; evalue=1.51e-110; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991539 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057771801.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057771801.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771801.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771801.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771801.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51463743 |
A |
ATG |
2bp_insertion | frameshift_variant | 3 | B130,B80,C40 |
Chr1:51463743 |
A |
ATG |
2bp_insertion | CDS_variant | 3 | B130,B80,C40 |
Chr1:51463755 |
GCC |
G |
2bp_deletion | frameshift_variant | 5 | B130,B48,B80,C40,C65 |
Chr1:51463755 |
GCC |
G |
2bp_deletion | CDS_variant | 5 | B130,B48,B80,C40,C65 |
Chr1:51463761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B130,B48,B80,C40,C65 |
Chr1:51463770 |
TCG |
T |
2bp_deletion | frameshift_variant | 6 | B130,B48,B67,B80,C40,C65 |
Chr1:51463781 |
T |
TAG |
2bp_insertion | frameshift_variant | 6 | B130,B48,B67,B80,C40,C65 |
Chr1:51463783 |
TTA |
T |
2bp_deletion | frameshift_variant | 7 | B130,B51,B67,B80,C40,C65,D10 |
Chr1:51463797 |
G |
GA |
1bp_insertion | frameshift_variant | 9 | B13,B130,B48,B51,B67,B73,B80,C40,C65 |
Chr1:51463801 |
GGT |
G |
2bp_deletion | frameshift_variant | 9 | B13,B130,B48,B51,B67,B73,B80,C40,C65 |
Chr1:51463806 |
TG |
T |
1bp_deletion | frameshift_variant | 9 | B13,B130,B48,B51,B67,B73,B80,C40,C65 |
Chr1:51463814 |
GA |
G |
1bp_deletion | frameshift_variant | 8 | B130,B48,B51,B67,B73,B80,C40,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771801.1PF18052
Rx_N 6-100 aa
PF00931
NB-ARC 182-353 aa
PF23559
WHD_DRP 442-515 aa
PF23598
LRR_14 629-906 aa
PF25019
LRR_R13L1-DRL21 727-865 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771801.1 |
Pfam | PF18052 |
Rx_N | Domain | 6 | 100 | 7.5e-21 | 74.8 | Rx N-terminal domain |
XP_057771801.1 |
Pfam | PF00931 |
NB-ARC | Domain | 182 | 353 | 7.3e-37 | 127.3 | NB-ARC domain |
XP_057771801.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 442 | 515 | 1.2e-18 | 67.6 | Disease resistance protein Winged helix domain |
XP_057771801.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 629 | 906 | 2.8e-25 | 89.5 | Leucine-rich repeat region |
XP_057771801.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 727 | 865 | 7.1e-28 | 97.8 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。