Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000347

染色体: Chr07 坐标: 2353086-2356337 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000347
名称SmilChr07G000347
描述dual specificity protein phosphatase 1-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向2353086 - 2356337 / +

ID 对照

NCBI Gene IDLOC130991547
GeneID130991547
locus_tag-
NCBI NameLOC130991547
原始查询LOC130991547

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述dual specificity protein phosphatase 1-like
产物dual specificity protein phosphatase 1-like
ArabidopsisAT3G23610 (DSPTP1)
dual specificity protein phosphatase 1 [Source:NCBI gene (formerly Entrezgene);Acc:821941]
identity=59.3; qcov=0.866; evalue=1.55e-71; confidence=high
RiceOs01g0390900 (OsDsPTP1)
-
identity=56.6; qcov=0.85; evalue=9.65e-63; confidence=high
GOGO:0005737 (cytoplasm); GO:0006470 (protein dephosphorylation); GO:0008330 (protein tyrosine/threonine phosphatase activity); GO:0017017 (MAP kinase tyrosine/serine/threonine phosphatase activity); GO:0043409 (negative regulation of MAPK cascade)
KEGG-
PfamPF00782 (DSPc)
InterPro-
eggNOG-
NRGeneID:130991547

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057771807.1
2 Cytosol 细胞质基质 1.00000 XP_057771807.1
3 Nucleus 细胞核 0.40000 XP_057771807.1
4 Chromosome 染色体 0.00000 XP_057771807.1
5 Centromere 着丝粒 0.00000 XP_057771807.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:2354185 C T EMS_canonical_SNV CDS_variant 2 A21,B101
Chr7:2354399 G A EMS_canonical_SNV CDS_variant 1 C8
Chr7:2354786 C T EMS_canonical_SNV CDS_variant 2 B4,C15
Chr7:2354822 G A EMS_canonical_SNV CDS_variant 2 C46,C5
Chr7:2355793 C T EMS_canonical_SNV CDS_variant 2 B133,D6
Chr7:2355823 C T EMS_canonical_SNV CDS_variant 3 B26,B8,C23
Chr7:2355841 C T EMS_canonical_SNV CDS_variant 4 B117,B127,C54,C87
Chr7:2356065 G GA 1bp_insertion CDS_variant 5 B133,B26,B8,C23,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057771807.1
187 aa
N
1
94
187
DSPc
C
PF00782 DSPc 36-165 aa
XP_057771808.1
187 aa
N
1
94
187
DSPc
C
PF00782 DSPc 36-165 aa
XP_057771809.1
187 aa
N
1
94
187
DSPc
C
PF00782 DSPc 36-165 aa
XP_057771810.1
187 aa
N
1
94
187
DSPc
C
PF00782 DSPc 36-165 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057771807.1 Pfam PF00782 DSPc Domain 36 165 9.7e-34 116.8 Dual specificity phosphatase, catalytic domain
XP_057771808.1 Pfam PF00782 DSPc Domain 36 165 9.7e-34 116.8 Dual specificity phosphatase, catalytic domain
XP_057771809.1 Pfam PF00782 DSPc Domain 36 165 9.7e-34 116.8 Dual specificity phosphatase, catalytic domain
XP_057771810.1 Pfam PF00782 DSPc Domain 36 165 9.7e-34 116.8 Dual specificity phosphatase, catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057915824.1
AAACTATATTTAATAAAAATAAATGCAATTTTTGGCGCAAGGCCCAACTTTAGACTGACCAGAAGAATCTGAACCGAAAACTACTGCTTCACTACTGCGGAATCTCTCTCTCTCTCTCTCTCTCTCCCATAGAGGAAGGAAAGAAGGAAGGCATCTGTTTCTCATACGAAATTCCCATTATTCCTTTCGTCCTAGGGTTCATCTCGGAAGACAACAAAAGTAGTGCAGAAATTTACACATTGGCAATGAATGGTGCAGCA...
XM_057915827.1
ATTCCTTTCGTCCTAGGGTACGTGATCCGCTCTCAACTCCTATCATTGCGTCAGTGATTGGAATTGTTCTTGTTTCTTACAACTATTGACTTAAAAATTCCTTCTTTTTGATTGGCCCTTTCACTTTTAAGGTTCATCTCGGAAGACAACAAAAGTAGTGCAGAAATTTACACATTGGCAATGAATGGTGCAGCATTTAAGGAACGTATAGCAGCACTATTGAAAGTCATCCAAGTTTCGAAAATTCTCAAAGACGACAA...

CDS

4 records

下载 CDS FASTA
LOC130991547
ATGAATGGTGCAGCATTTAAGGAACGTATAGCAGCACTATTGAAAGTCATCCAAGTTTCGAAAATTCTCAAAGACGACAACATTCCTTGCCTGATTGAAGAGGGCCTTTTCTTAGGCTCTCTTGGAGCTGCCAATAATAGGACTGCTTTGAAAGCGTTGAACGTCACACACGTATTGACTGTTGCCCATACACTGACCCCTTCTCATCCTAACGATTTTGTGTACAAAATTATTGAAGTGCCTGACAGAGAAGATGTTAA...
LOC130991547
ATGAATGGTGCAGCATTTAAGGAACGTATAGCAGCACTATTGAAAGTCATCCAAGTTTCGAAAATTCTCAAAGACGACAACATTCCTTGCCTGATTGAAGAGGGCCTTTTCTTAGGCTCTCTTGGAGCTGCCAATAATAGGACTGCTTTGAAAGCGTTGAACGTCACACACGTATTGACTGTTGCCCATACACTGACCCCTTCTCATCCTAACGATTTTGTGTACAAAATTATTGAAGTGCCTGACAGAGAAGATGTTAA...

Protein

4 records

下载 Protein FASTA
XP_057771807.1
MNGAAFKERIAALLKVIQVSKILKDDNIPCLIEEGLFLGSLGAANNRTALKALNVTHVLTVAHTLTPSHPNDFVYKIIEVPDREDVKLSQYFDECFAFIDEARASGGGVLVHCFAGRSRSVTVVVAYLMFKRGMSLSDALGYVRMKRPTICPNRGFISQLQEYAKFLQDARNKDAAAHEPEESGSSV
XP_057771808.1
MNGAAFKERIAALLKVIQVSKILKDDNIPCLIEEGLFLGSLGAANNRTALKALNVTHVLTVAHTLTPSHPNDFVYKIIEVPDREDVKLSQYFDECFAFIDEARASGGGVLVHCFAGRSRSVTVVVAYLMFKRGMSLSDALGYVRMKRPTICPNRGFISQLQEYAKFLQDARNKDAAAHEPEESGSSV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器