Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000359`

染色体: Chr07 坐标: 2461921-2464962 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000359`
名称	SmilChr07G000359
描述	uncharacterized SmilChr07G000359
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	2461921 - 2464962 / `-`

ID 对照

NCBI Gene ID	`LOC130991558`
GeneID	`130991558`
locus_tag	`-`
NCBI Name	`LOC130991558`
原始查询	`LOC130991558`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Serinc-domain containing serine and sphingolipid biosynthesis protein [Source:NCBI gene (formerly Entrezgene);Acc:819791]; symbol=AT3G06170; hit=AT3G06170; species=arabidopsis; confidence=high
产物	Serinc-domain containing serine and sphingolipid biosynthesis protein [Source:NCBI gene (formerly Entrezgene);Acc:819791]; symbol=AT3G06170; hit=AT3G06170; species=arabidopsis; confidence=high
Arabidopsis	`AT3G06170` (AT3G06170) Serinc-domain containing serine and sphingolipid biosynthesis protein [Source:NCBI gene (formerly Entrezgene);Acc:819791] identity=75.6; qcov=0.998; evalue=0; confidence=high
Rice	`Os03g0454100` - identity=70.4; qcov=1.01; evalue=0; confidence=high
GO	GO:0016020 (membrane)
KEGG	-
Pfam	PF03348 (Serinc)
InterPro	-
eggNOG	-
NR	GeneID:130991558

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.40000	`XP_057771826.1`
2	Vacuole membrane	液泡膜	0.40000	`XP_057771826.1`
3	Vesicle	囊泡	0.40000	`XP_057771827.1`
4	Vacuole	液泡	0.20000	`XP_057771826.1`
5	Nucleus	细胞核	0.00000	`XP_057771826.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:2462149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B123,B64
`Chr7:2462152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr7:2462239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B59,C33,C35
`Chr7:2462254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr7:2462338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B113,B70,B87,B99
`Chr7:2462339`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr7:2462368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B14,C83
`Chr7:2462493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr7:2462629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B38,B39,B56,B96,D11
`Chr7:2462638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr7:2462691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C37,C71,C75
`Chr7:2462956`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B29,C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771826.1

411 aa

206

411

Serinc

PF03348 Serinc 5-408 aa

XP_057771827.1

407 aa

204

407

Serinc

PF03348 Serinc 5-404 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771826.1`	Pfam	`PF03348`	Serinc	Domain	5	408	4.8e-120	402.2	Serine incorporator (Serinc)
`XP_057771827.1`	Pfam	`PF03348`	Serinc	Domain	5	404	2e-118	396.8	Serine incorporator (Serinc)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915844.1
ATAATTCGAATTTTGGGGAAAACGATCAACACAAGAAAGCCCAGCTTTCAACTTGGGAGAATTGGGAGCTCGATAATTCACCTTCATCGTCATTTGATTTGAATTTTGATAAATCAATCATCAAATTCCCACTTCATCTGAATCGCATCCCCGATTCCTCGTGAGGGAAAGAGATGTCGTGTCTGGCATCGTGCTGCGCGTCTATGACGTGCGGGCTGTGCACATCGGTGGCCTCGGGCATCACTAAGCGCTCCGCCAGA...

XM_057915843.1
ATAATTCGAATTTTGGGGAAAACGATCAACACAAGAAAGCCCAGCTTTCAACTTGGGAGAATTGGGAGCTCGATAATTCACCTTCATCGTCATTTGATTTGAATTTTGATAAATCAATCATCAAATTCCCACTTCATCTGAATCGCATCCCCGATTCCTCGTGAGGGAAAGAGATGTCGTGTCTGGCATCGTGCTGCGCGTCTATGACGTGCGGGCTGTGCACATCGGTGGCCTCGGGCATCACTAAGCGCTCCGCCAGA...

CDS

2 records

下载 CDS FASTA

LOC130991558
ATGTCGTGTCTGGCATCGTGCTGCGCGTCTATGACGTGCGGGCTGTGCACATCGGTGGCCTCGGGCATCACTAAGCGCTCCGCCAGAATTGCTTACTGCGGCTTGTTTGGTGTTTCCTTAGTTATTTCTTGGATTCTCAGAGAAGTCGGTGCACCTCTCCTCAAACAATTCTCTTGGATAAATACTTCGGATGACCTTTCGGACCAATGGTTCCAAATACAGGCGGTTCTTCGTGTCAGCATGGGGAATTTCTTGTTTTT...

Protein

2 records

下载 Protein FASTA

XP_057771826.1
MSCLASCCASMTCGLCTSVASGITKRSARIAYCGLFGVSLVISWILREVGAPLLKQFSWINTSDDLSDQWFQIQAVLRVSMGNFLFFGVLALIMIGVKDQNDRRDSWHHGGWIAKMVIWALLTILMFFVPNAVIDVYGVISKFGAGCFLLVQVLILLDATHSWNDSWVAKDEQKWYLALLAVSVACYLGAFTFTGVLFIWFNPSGNDCGLNVFFLVTNFILAFAFAIIALHPKVNGSLLPASVISVYCAYVCYTGLASEP...

XP_057771827.1
MSCLASCCASMTCGLCTSVASGITKRSARIAYCGLFGVSLVISWILREVGAPLLKQFSWINTSDDLSDQWFQIQAVLRVSMGNFLFFGVLALIMIGVKDQNDRRDSWHHGGWIAKMVIWALLTILMFFVPNAVIDVYGVISKFGAGCFLLVQVLILLDATHSWNDSWVAKDEQKWYLALLAVSVACYLGAFTFTGVLFIWFNPSGNDCGLNVFFLVTNFILAFAFAIIALHPKVNGSLLPASVISVYCAYVCYTGLASEP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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