Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000403`

染色体: Chr07 坐标: 2790318-2795051 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000403`
名称	SmilChr07G000403
描述	nucleoside hydrolase 3-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	2790318 - 2795051 / `+`

ID 对照

NCBI Gene ID	`LOC130991599`
GeneID	`130991599`
locus_tag	`-`
NCBI Name	`LOC130991599`
原始查询	`LOC130991599`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nucleoside hydrolase 3-like
产物	nucleoside hydrolase 3-like
Arabidopsis	`AT5G18860` (NSH3) inosine-uridine preferring nucleoside hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832004] identity=70; qcov=0.987; evalue=0; confidence=high
Rice	`Os05g0406100` - identity=56.9; qcov=0.751; evalue=1.09e-139; confidence=high
GO	GO:0016799 (hydrolase activity, hydrolyzing N-glycosyl compounds)
KEGG	-
Pfam	PF01156 (IU_nuc_hydro)
InterPro	-
eggNOG	-
NR	GeneID:130991599

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057771879.1`
2	Secreted	分泌到胞外	0.40000	`XP_057771878.1`
3	Nucleus	细胞核	0.00000	`XP_057771878.1`
4	Chromosome	染色体	0.00000	`XP_057771878.1`
5	Centromere	着丝粒	0.00000	`XP_057771878.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:2790807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr7:2790810`	`A`	`ATG`	2bp_insertion	frameshift_variant	17	A13,A25,B10,B107,B113,B114,B60,B70,B84,B88,B99,C12,C15,C34,C38,C56,C82
`Chr7:2790918`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:2791793`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B68
`Chr7:2791865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr7:2792098`	`A`	`AT`	1bp_insertion	frameshift_variant	2	B78,C50
`Chr7:2792098`	`A`	`AT`	1bp_insertion	CDS_variant	2	B78,C50
`Chr7:2792689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C27,D10,D9
`Chr7:2792902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C27
`Chr7:2793089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:2793093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B137,B139,B99,C73,C87
`Chr7:2793151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771878.1

883 aa

442

883

IU_nuc_hydro

PF01156 IU_nuc_hydro 34-372 aa PF01156 IU_nuc_hydro 504-848 aa

XP_057771879.1

466 aa

233

466

IU_nuc_hydro

PF01156 IU_nuc_hydro 34-372 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771878.1`	Pfam	`PF01156`	IU_nuc_hydro	Domain	34	372	2.8e-72	244.6	Inosine-uridine preferring nucleoside hydrolase
`XP_057771878.1`	Pfam	`PF01156`	IU_nuc_hydro	Domain	504	848	2.8e-72	244.6	Inosine-uridine preferring nucleoside hydrolase
`XP_057771879.1`	Pfam	`PF01156`	IU_nuc_hydro	Domain	34	372	4.1e-37	129.2	Inosine-uridine preferring nucleoside hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915896.1
TCATCTCCTTCCTAACTACCAAAATTTATCTACAAAATACTCCTAATAACATTCGTTTTTTTCCTTTTAATGGATGAAATAACAATAAAATAATCTGGGTCTTTCAATTTGCTTGCTTTCTCTTTAAATAGTAGTAAAATTTTGTCAGTGTTAAAGAATCAATCTGCTATTGCCTACTGCTGCATATATAGCCAGTCTCCTTTCTTTCCTACTTTTCCACACAGAAACACACATACAGAAAAAAAAAACACAATCTATCA...

XM_057915895.1
TTCCTAACTACCAAAATTTATCTACAAAATACTCCTAATAACATTCGTTTTTTTCCTTTTAATGGATGAAATAACAATAAAATAATCTGGGTCTTTCAATTTGCTTGCTTTCTCTTTAAATAGTAGTAAAATTTTGTCAGTGTTAAAGAATCAATCTGCTATTGCCTACTGCTGCATATATAGCCAGTCTCCTTTCTTTCCTACTTTTCCACACAGAAACACACATACAGAAAAAAAAAACACAATCTATCACATACATA...

CDS

2 records

下载 CDS FASTA

LOC130991599
ATGAAGATACAGAGATGTGTGTGTGTGTATCTATGTATTGTTGTGATGGTTGGATTGATTGGTAGCAGCAAAGACTGTGTGGAGGGGCTGCCTCGCCGGATTATCTTGGATACAGATGTCGACACCGATGATTTATTTGCTCTGTTATACATTTTGAAGCTTAATACTTCAGAGTTTCATTTGGAGGCAGTTACTGTAAGCGCCAACGCTTGGACCAACGCGGGGCACGCTGTGAATCAGGTGTACGACATCCTTTACAT...

Protein

2 records

下载 Protein FASTA

XP_057771878.1
MKIQRCVCVYLCIVVMVGLIGSSKDCVEGLPRRIILDTDVDTDDLFALLYILKLNTSEFHLEAVTVSANAWTNAGHAVNQVYDILYMMGRDDVAVGVGGEGGILEDGTILPNVGGYHPIIEQGNTTAAYCRYRQAIPVGLGGRLDIDTNFGFRKSFLPQGRRRYAPLHQPTSQQVLIDKISAGPITVFIIGAHTNFGIFLMSNPHLKKNIEHIYIMGGGVRSSNPTGCCPKNSSSTCQPRQCGDRGNVFTDYTSNPYAEF...

XP_057771879.1
MKIQRCVCVYLCIVVMVGLIGSSKDCVEGLPRRIILDTDVDTDDLFALLYILKLNTSEFHLEAVTVSANAWTNAGHAVNQVYDILYMMGRDDVAVGVGGEGGILEDGTILPNVGGYHPIIEQGNTTAAYCRYRQAIPVGLGGRLDIDTNFGFRKSFLPQGRRRYAPLHQPTSQQVLIDKISAGPITVFIIGAHTNFGIFLMSNPHLKKNIEHIYIMGGGVRSSNPTGCCPKNSSSTCQPRQCGDRGNVFTDYTSNPYAEF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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