当前解析结果
SmilChr07G000408| 统一新 Gene ID | SmilChr07G000408 |
|---|---|
| 名称 | SmilChr07G000408 |
| 描述 | uncharacterized protein At4g15545 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2813666 - 2817042 / - |
| NCBI Gene ID | LOC130991604 |
|---|---|
| GeneID | 130991604 |
| locus_tag | - |
| NCBI Name | LOC130991604 |
| 原始查询 | LOC130991604 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | PH-response transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:827228]; symbol=AT4G15545; hit=AT4G15545; species=arabidopsis; confidence=high |
| 产物 | PH-response transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:827228]; symbol=AT4G15545; hit=AT4G15545; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G15545 (AT4G15545)PH-response transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:827228] identity=59; qcov=0.979; evalue=1.17e-124; confidence=high |
| Rice | Os01g0768300- identity=40.3; qcov=0.988; evalue=2.35e-63; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF25972 (At4g15545_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991604 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057771884.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.40000 | XP_057771884.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057771884.1 |
| 4 | Nucleus membrane | 核膜 | 0.20000 | XP_057771884.1 |
| 5 | Autophagic vesicle | Autophagic vesicle | 0.20000 | XP_057771884.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2814221 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr7:2814231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B58,C35 |
Chr7:2814553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:2814855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B58,C35 |
Chr7:2815088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B35,B53 |
Chr7:2815319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,C35 |
Chr7:2816039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr7:2816067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B58,C35 |
Chr7:2816578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B110 |
Chr7:2816630 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr7:2816674 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C19 |
Chr7:2816674 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771884.1PF25972
At4g15545_C 272-337 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771884.1 |
Pfam | PF25972 |
At4g15545_C | Domain | 272 | 337 | 1.3e-34 | 118.7 | At4g15545-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。