Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000412`

染色体: Chr07 坐标: 2843807-2852483 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000412`
名称	SmilChr07G000412
描述	pyruvate, phosphate dikinase, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	2843807 - 2852483 / `-`

ID 对照

NCBI Gene ID	`LOC130991607`
GeneID	`130991607`
locus_tag	`-`
NCBI Name	`LOC130991607`
原始查询	`LOC130991607`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pyruvate, phosphate dikinase, chloroplastic
产物	pyruvate%2C phosphate dikinase%2C chloroplastic
Arabidopsis	`AT4G15530` (PPDK) pyruvate orthophosphate dikinase [Source:NCBI gene (formerly Entrezgene);Acc:827226] identity=83.3; qcov=0.999; evalue=0; confidence=high
Rice	`Os05g0405000` (flo4) - identity=81.1; qcov=0.997; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0006090 (pyruvate metabolic process); GO:0016301 (kinase activity); GO:0016310 (phosphorylation); GO:0050242 (pyruvate, phosphate dikinase activity)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00391 (PEP-utilizers); PF01326 (PPDK_N); PF02896 (PEP-utilizers_C)
InterPro	-
eggNOG	-
NR	GeneID:130991607

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057771887.1`
2	Cytoplasm	细胞质	1.00000	`XP_057771888.1`
3	Nucleus	细胞核	0.00000	`XP_057771887.1`
4	Chromosome	染色体	0.00000	`XP_057771887.1`
5	Centromere	着丝粒	0.00000	`XP_057771887.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:2844124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B49,B79
`Chr7:2844169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B13,B68,B98
`Chr7:2844360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr7:2844393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:2844531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr7:2844555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:2844777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B77,C42
`Chr7:2844780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr7:2844937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B138,B93,C62
`Chr7:2845008`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:2845018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B68
`Chr7:2845033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771887.1

959 aa

480

959

PPDK_N

PEP-utilizers

PEP-utilizers_C

PF01326 PPDK_N 105-158 aa PF01326 PPDK_N 145-381 aa PF01326 PPDK_N 388-442 aa PF00391 PEP-utilizers 509-589 aa PF02896 PEP-utilizers_C 604-957 aa

XP_057771888.1

875 aa

438

875

PPDK_N

PEP-utilizers

PEP-utilizers_C

PF01326 PPDK_N 21-74 aa PF01326 PPDK_N 61-297 aa PF01326 PPDK_N 304-358 aa PF00391 PEP-utilizers 425-505 aa PF02896 PEP-utilizers_C 520-873 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771887.1`	Pfam	`PF01326`	PPDK_N	Family	105	158	4.8e-46	158.2	Pyruvate phosphate dikinase, AMP/ATP-binding domain
`XP_057771887.1`	Pfam	`PF01326`	PPDK_N	Family	145	381	4.8e-46	158.2	Pyruvate phosphate dikinase, AMP/ATP-binding domain
`XP_057771887.1`	Pfam	`PF01326`	PPDK_N	Family	388	442	4.8e-46	158.2	Pyruvate phosphate dikinase, AMP/ATP-binding domain
`XP_057771887.1`	Pfam	`PF00391`	PEP-utilizers	Domain	509	589	1.6e-23	82.8	PEP-utilising enzyme, mobile domain
`XP_057771887.1`	Pfam	`PF02896`	PEP-utilizers_C	Domain	604	957	2.2e-93	313.4	PEP-utilising enzyme, PEP-binding domain
`XP_057771888.1`	Pfam	`PF01326`	PPDK_N	Family	21	74	3.3e-46	158.8	Pyruvate phosphate dikinase, AMP/ATP-binding domain
`XP_057771888.1`	Pfam	`PF01326`	PPDK_N	Family	61	297	3.3e-46	158.8	Pyruvate phosphate dikinase, AMP/ATP-binding domain
`XP_057771888.1`	Pfam	`PF01326`	PPDK_N	Family	304	358	3.3e-46	158.8	Pyruvate phosphate dikinase, AMP/ATP-binding domain
`XP_057771888.1`	Pfam	`PF00391`	PEP-utilizers	Domain	425	505	1.8e-23	82.6	PEP-utilising enzyme, mobile domain
`XP_057771888.1`	Pfam	`PF02896`	PEP-utilizers_C	Domain	520	873	1.8e-93	313.7	PEP-utilising enzyme, PEP-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915904.1
TAAGGTCCACTCATTTTCCCACCATACATATAAAATCAATCCAAATCACCTACCGCCAATTTTTGGGCTTCAGTGATCTCTCATCTTCAACAAAACAAAATACACACACAACACACACTAAATCACGACACCACTGATTGAATTTTCTTCCTCTGCAGCTCATTTAATTTCGTCGAAATAAGGTATGTCTTCGATACTAAAAGACATATTGATAAGATCGACGACGAGCGAGGTGTATACACGAAAATTAATTAAGGAGA...

XM_057915905.1
TCTTGTGTTATTTGCAATTGCATTTTGCCTTAATTCAGTTGCCTTCTGCTTCACTTGCTAGTTCAGAGGCATCATGATGAAGAGGGTGTTCACTTTCGGAAAGGGAAGGAGTGAAGGAAACAAGGGCATGAAATCCTTGTTGGGAGGGAAGGGTGCAAACTTGGCTGAGATGGCGAGCATCGGGCTGTCGGTGCCCCCGGGGCTCACCATCTCCACGGAGGCGTGCCAAGAGTATCAGCAAGTAGGCAAGAAGCTGCCAC...

CDS

2 records

下载 CDS FASTA

LOC130991607
ATGTCTTCGATACTAAAAGACATATTGATAAGATCGACGACGAGCGAGGTGTATACACGAAAATTAATTAAGGAGAAATTCGAGGTCGATCAGCCCAGAGCGCACCCTCGTCCCACAAGCGCGGGTCGGTGGGCTCGAGCCGTCCGGTGCCATGGCTCGAGAATCGAGCCAAGTGGGTTGGCTGAACCAGAGCCCGGATCAAAGCTAAGGGCTCAAGCTATACTGACTCCTGTTTCGGACCCCACCTCGACTACTAAAAA...

LOC130991607
ATGATGAAGAGGGTGTTCACTTTCGGAAAGGGAAGGAGTGAAGGAAACAAGGGCATGAAATCCTTGTTGGGAGGGAAGGGTGCAAACTTGGCTGAGATGGCGAGCATCGGGCTGTCGGTGCCCCCGGGGCTCACCATCTCCACGGAGGCGTGCCAAGAGTATCAGCAAGTAGGCAAGAAGCTGCCACCGGGGCTGTGGGAGGAGATAATGCAGGGCTTGAAGATAGTCGAGGGCGACATGGGAGCTTTCCTCGGTGACCC...

Protein

2 records

下载 Protein FASTA

XP_057771887.1
MSSILKDILIRSTTSEVYTRKLIKEKFEVDQPRAHPRPTSAGRWARAVRCHGSRIEPSGLAEPEPGSKLRAQAILTPVSDPTSTTKKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMASIGLSVPPGLTISTEACQEYQQVGKKLPPGLWEEIMQGLKIVEGDMGAFLGDPSRPLLLSVRSGAAISMPGMMDTVLNLGLNDEVVSGLAAKSGERFAYDSFRRFLDMFGDVVMGIPHALFDEKLEDMKSAKGIKLDTDLTA...

XP_057771888.1
MMKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMASIGLSVPPGLTISTEACQEYQQVGKKLPPGLWEEIMQGLKIVEGDMGAFLGDPSRPLLLSVRSGAAISMPGMMDTVLNLGLNDEVVSGLAAKSGERFAYDSFRRFLDMFGDVVMGIPHALFDEKLEDMKSAKGIKLDTDLTASDLKELVEEYKSVYVQGRGEQFPSDPMRQLELAVKAVFDSWDSPRAIKYRSINNITGLKGTAVNIQCMVFGNMGNTSGTGVLFT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器