Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000414

染色体: Chr07 坐标: 2860392-2862855 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000414
名称SmilChr07G000414
描述uncharacterized SmilChr07G000414
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向2860392 - 2862855 / +

ID 对照

NCBI Gene IDLOC130991611
GeneID130991611
locus_tag-
NCBI NameLOC130991611
原始查询LOC130991611

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述Cox19-like CHCH family protein [Source:NCBI gene (formerly Entrezgene);Acc:832010]; symbol=AT5G18920; hit=AT5G18920; species=arabidopsis; confidence=medium
产物Cox19-like CHCH family protein [Source:NCBI gene (formerly Entrezgene);Acc:832010]; symbol=AT5G18920; hit=AT5G18920; species=arabidopsis; confidence=medium
ArabidopsisAT5G18920 (AT5G18920)
Cox19-like CHCH family protein [Source:NCBI gene (formerly Entrezgene);Acc:832010]
identity=71.7; qcov=0.662; evalue=1.83e-23; confidence=medium
RiceOs05g0404300
-
identity=65.5; qcov=0.688; evalue=1.22e-22; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130991611

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057771898.1
2 Mitochondrion intermembrane space Mitochondrion intermembrane space 1.00000 XP_057771898.1
3 Nucleus 细胞核 0.00000 XP_057771898.1
4 Chromosome 染色体 0.00000 XP_057771898.1
5 Centromere 着丝粒 0.00000 XP_057771898.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:2862229 CAA C 2bp_deletion frameshift_variant 4 A2,B131,B82,C8
Chr7:2862229 CAA C 2bp_deletion CDS_variant 4 A2,B131,B82,C8
Chr7:2862250 G GCC 2bp_insertion frameshift_variant 1 A8
Chr7:2862250 G GCC 2bp_insertion CDS_variant 1 A8
Chr7:2862351 C T EMS_canonical_SNV CDS_variant 1 B78

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057915915.1
TTCATTATCAAATCTTTAATCTCCAAAACCCTTCTCCCCAAAGCAAAAACCCTAAAGCATCGATTTTTACTTTTTCCTTTCTCTTTTTTCATAGATTTTAACTAAAAGCCCCAATAATATGGTACCCGAAAGCCAAGTAGCGCGCGCCTGCTCATAACAAATTCTTATCTACAGTTTCTGCTGTGTCTGATTTTCCAACCTCTACAGGTGGGTATCATTCTATTTTTTTGGATTATTATTTTTAAAATTTTTATTTTCCG...
XM_057915916.1
TTCATTATCAAATCTTTAATCTCCAAAACCCTTCTCCCCAAAGCAAAAACCCTAAAGCATCGATTTTTACTTTTTCCTTTCTCTTTTTTCATAGATTTTAACTAAAAGCCCCAATAATATGGTACCCGAAAGCCAAGTAGCGCGCGCCTGCTCATAACAAATTCTTATCTACAGTTTCTGCTGTGTCTGATTTTCCAACCTCTACAGGTGGGTATCATTCTATTTTTTTGGATTATTATTTTTAAAATTTTTATTTTCCG...

CDS

2 records

下载 CDS FASTA
LOC130991611
ATGGACCAACCGGCTAAACCTAGCTCAAGCACAAGCCCAAGCCCAAGCAAACTATTTTCACAACCACCCGAACTGCATCAAAGCGATGCAGACGAGGACGATGAGAATGTCAAGCAGCTTGGAAAATGCTCCTCTGTCTACTTAGCTCTACAGGATTGTCTTATCAATTCCAACAGGAACTGGAAATCTTGTCAAAAAGAAGTTCAACTCCTGAAAGCATGCAATAATGGAAGAAATAACTGA
LOC130991611
ATGGACCAACCGGCTAAACCTAGCTCAAGCACAAGCCCAAGCCCAAGCAAACTATTTTCACAACCACCCGAACTGCATCAAAGCGATGCAGACGAGGACGATGAGAATGTCAAGCAGCTTGGAAAATGCTCCTCTGTCTACTTAGCTCTACAGGATTGTCTTATCAATTCCAACAGGAACTGGAAATCTTGTCAAAAAGAAGTTCAACTCCTGAAAGCATGCAATAATGGAAGAAATAACTGA

Protein

2 records

下载 Protein FASTA
XP_057771898.1
MDQPAKPSSSTSPSPSKLFSQPPELHQSDADEDDENVKQLGKCSSVYLALQDCLINSNRNWKSCQKEVQLLKACNNGRNN
XP_057771899.1
MDQPAKPSSSTSPSPSKLFSQPPELHQSDADEDDENVKQLGKCSSVYLALQDCLINSNRNWKSCQKEVQLLKACNNGRNN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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